Mercurial > repos > galaxyp > openms_filefilter

comparison FileFilter.xml @ 9:348aec6301b1 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 07:54:36 -0400
parents fce0d752c6c5
children acf2b5b25c75
comparison
equal deleted inserted replaced
8:4b5c7feac8db 9:348aec6301b1
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>FileFilter 13 <command detect_errors="aggressive"><![CDATA[FileFilter
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
337 #end if 337 #end if
338 #if $adv_opts.param_algorithm_SignalToNoise_noise_for_empty_window: 338 #if $adv_opts.param_algorithm_SignalToNoise_noise_for_empty_window:
339 -algorithm:SignalToNoise:noise_for_empty_window $adv_opts.param_algorithm_SignalToNoise_noise_for_empty_window 339 -algorithm:SignalToNoise:noise_for_empty_window $adv_opts.param_algorithm_SignalToNoise_noise_for_empty_window
340 #end if 340 #end if
341 #end if 341 #end if
342 </command> 342 ]]></command>
343 <inputs> 343 <inputs>
344 <param name="param_in" type="data" format="mzml,featurexml,consensusxml" optional="False" label="Input file" help="(-in) "/> 344 <param name="param_in" type="data" format="mzml,featurexml,consensusxml" optional="False" label="Input file" help="(-in) "/>
345 <param name="param_out_type" display="radio" type="select" optional="True" label="Output file type -- default: determined from file extension or content" help="(-out_type) "> 345 <param name="param_out_type" display="radio" type="select" optional="True" label="Output file type -- default: determined from file extension or content" help="(-out_type) ">
346 <option value="mzML">mzML</option> 346 <option value="mzML">mzML</option>
347 <option value="featureXML">featureXML</option> 347 <option value="featureXML">featureXML</option>
653 <data name="param_out" metadata_source="param_in" format="input"/> 653 <data name="param_out" metadata_source="param_in" format="input"/>
654 </outputs> 654 </outputs>
655 <help>Extracts or manipulates portions of data from peak, feature or consensus-feature files. 655 <help>Extracts or manipulates portions of data from peak, feature or consensus-feature files.
656 656
657 657
658 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileFilter.html</help> 658 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FileFilter.html</help>
659 </tool> 659 </tool>