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comparison FileInfo.xml @ 0:a5e996f13660 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author galaxyp
date Wed, 01 Mar 2017 13:00:53 -0500
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children 33fea32c92e0
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-1:000000000000 0:a5e996f13660
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [File Handling]-->
4 <tool id="FileInfo" name="FileInfo" version="2.1.0">
5 <description>Shows basic information about the file, such as data ranges and file type.</description>
6 <macros>
7 <token name="@EXECUTABLE@">FileInfo</token>
8 <import>macros.xml</import>
9 </macros>
10 <expand macro="references"/>
11 <expand macro="stdio"/>
12 <expand macro="requirements"/>
13 <command>FileInfo
14
15 #if $param_in:
16 -in $param_in
17 #end if
18 #if $param_out:
19 -out $param_out
20 #end if
21 #if $param_out_tsv:
22 -out_tsv $param_out_tsv
23 #end if
24 #if $param_m:
25 -m
26 #end if
27 #if $param_p:
28 -p
29 #end if
30 #if $param_s:
31 -s
32 #end if
33 #if $param_d:
34 -d
35 #end if
36 #if $param_c:
37 -c
38 #end if
39 #if $param_v:
40 -v
41 #end if
42 #if $param_i:
43 -i
44 #end if
45 #if $adv_opts.adv_opts_selector=='advanced':
46 #if $adv_opts.param_force:
47 -force
48 #end if
49 #end if
50 </command>
51 <inputs>
52 <param name="param_in" type="data" format="mgf,mzml,mzxml,idxml,pepxml,mzid,featurexml,consensusxml" optional="False" label="input file" help="(-in) "/>
53 <param name="param_m" display="radio" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/>
54 <param name="param_p" display="radio" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/>
55 <param name="param_s" display="radio" type="boolean" truevalue="-s" falsevalue="" checked="false" optional="True" label="Computes a five-number statistics of intensities, qualities, and widths" help="(-s) "/>
56 <param name="param_d" display="radio" type="boolean" truevalue="-d" falsevalue="" checked="false" optional="True" label="Show detailed listing of all spectra and chromatograms (peak files only)" help="(-d) "/>
57 <param name="param_c" display="radio" type="boolean" truevalue="-c" falsevalue="" checked="false" optional="True" label="Check for corrupt data in the file (peak files only)" help="(-c) "/>
58 <param name="param_v" display="radio" type="boolean" truevalue="-v" falsevalue="" checked="false" optional="True" label="Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)" help="(-v) "/>
59 <param name="param_i" display="radio" type="boolean" truevalue="-i" falsevalue="" checked="false" optional="True" label="Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)" help="(-i) "/>
60 <expand macro="advanced_options">
61 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
62 </expand>
63 </inputs>
64 <outputs>
65 <data name="param_out" format="txt"/>
66 <data name="param_out_tsv" format="tabular"/>
67 </outputs>
68 <help>Shows basic information about the file, such as data ranges and file type.
69
70
71 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileInfo.html</help>
72 </tool>