Mercurial > repos > galaxyp > openms_fileinfo
view FileInfo.xml @ 1:85a6d0d7872b draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
author | galaxyp |
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date | Tue, 18 Apr 2017 16:06:26 -0400 |
parents | a5e996f13660 |
children | 33fea32c92e0 |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [File Handling]--> <tool id="FileInfo" name="FileInfo" version="2.1.0"> <description>Shows basic information about the file, such as data ranges and file type.</description> <macros> <token name="@EXECUTABLE@">FileInfo</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command>FileInfo #if $param_in: -in $param_in #end if #if $param_out: -out $param_out #end if #if $param_out_tsv: -out_tsv $param_out_tsv #end if #if $param_m: -m #end if #if $param_p: -p #end if #if $param_s: -s #end if #if $param_d: -d #end if #if $param_c: -c #end if #if $param_v: -v #end if #if $param_i: -i #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if </command> <inputs> <param name="param_in" type="data" format="mgf,mzml,mzxml,idxml,pepxml,mzid,featurexml,consensusxml" optional="False" label="input file" help="(-in) "/> <param name="param_m" display="radio" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/> <param name="param_p" display="radio" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/> <param name="param_s" display="radio" type="boolean" truevalue="-s" falsevalue="" checked="false" optional="True" label="Computes a five-number statistics of intensities, qualities, and widths" help="(-s) "/> <param name="param_d" display="radio" type="boolean" truevalue="-d" falsevalue="" checked="false" optional="True" label="Show detailed listing of all spectra and chromatograms (peak files only)" help="(-d) "/> <param name="param_c" display="radio" type="boolean" truevalue="-c" falsevalue="" checked="false" optional="True" label="Check for corrupt data in the file (peak files only)" help="(-c) "/> <param name="param_v" display="radio" type="boolean" truevalue="-v" falsevalue="" checked="false" optional="True" label="Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)" help="(-v) "/> <param name="param_i" display="radio" type="boolean" truevalue="-i" falsevalue="" checked="false" optional="True" label="Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)" help="(-i) "/> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="txt"/> <data name="param_out_tsv" format="tabular"/> </outputs> <help>Shows basic information about the file, such as data ranges and file type. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileInfo.html</help> </tool>