Mercurial > repos > galaxyp > openms_filemerger

comparison FileMerger.xml @ 13:8b871a67ba56 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:42:20 +0000
parents 1dfc532aadd1
children b2fc8da99bcc
comparison
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12:04e7a86378d5 13:8b871a67ba56
78 </param> 78 </param>
79 <param name="rt_filename" argument="-raw:rt_filename" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Try to guess the retention time of a file based on the filename" help="This option is useful for merging DTA files, where filenames should contain the string 'rt' directly followed by a floating point number, e.g. 'my_spectrum_rt2795.15.dta'"/> 79 <param name="rt_filename" argument="-raw:rt_filename" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Try to guess the retention time of a file based on the filename" help="This option is useful for merging DTA files, where filenames should contain the string 'rt' directly followed by a floating point number, e.g. 'my_spectrum_rt2795.15.dta'"/>
80 <param name="ms_level" argument="-raw:ms_level" type="integer" optional="true" value="0" label="If 1 or higher, this number is assigned to spectra as the MS level" help="This option is useful for DTA files which do not contain MS level information"/> 80 <param name="ms_level" argument="-raw:ms_level" type="integer" optional="true" value="0" label="If 1 or higher, this number is assigned to spectra as the MS level" help="This option is useful for DTA files which do not contain MS level information"/>
81 </section> 81 </section>
82 <expand macro="adv_opts_macro"> 82 <expand macro="adv_opts_macro">
83 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 83 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
84 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 84 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
85 <expand macro="list_string_san"/> 85 <expand macro="list_string_san"/>
86 </param> 86 </param>
87 </expand> 87 </expand>
88 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 88 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
89 <option value="trafo_out_FLAG">trafo_out (If 1 or higher, this number is assigned to spectra as the MS level)</option> 89 <option value="trafo_out_FLAG">trafo_out (Output of retention time transformations that were applied to the input files to produce non-overlapping RT ranges)</option>
90 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 90 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
91 </param> 91 </param>
92 </inputs> 92 </inputs>
93 <outputs> 93 <outputs>
94 <data name="out" label="${tool.name} on ${on_string}: out"> 94 <data name="out" label="${tool.name} on ${on_string}: out">
113 <expand macro="manutest_FileMerger"/> 113 <expand macro="manutest_FileMerger"/>
114 </tests> 114 </tests>
115 <help><![CDATA[Merges several MS files into one file. 115 <help><![CDATA[Merges several MS files into one file.
116 116
117 117
118 For more information, visit http://www.openms.de/documentation/TOPP_FileMerger.html]]></help> 118 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_FileMerger.html]]></help>
119 <expand macro="references"/> 119 <expand macro="references"/>
120 </tool> 120 </tool>