Mercurial > repos > galaxyp > openms_fuzzydiff
view FuzzyDiff.xml @ 9:42b3646bc300 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Wed, 15 May 2019 08:02:13 -0400 |
parents | cabf2360876a |
children | 36c84cb92e46 |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Utilities]--> <tool id="FuzzyDiff" name="FuzzyDiff" version="2.3.0"> <description>Compares two files, tolerating numeric differences.</description> <macros> <token name="@EXECUTABLE@">FuzzyDiff</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[FuzzyDiff #if $param_in1: -in1 $param_in1 #end if #if $param_in2: -in2 $param_in2 #end if #if $param_ratio: -ratio $param_ratio #end if #if $param_absdiff: -absdiff $param_absdiff #end if #if $param_verbose: -verbose $param_verbose #end if #if $param_tab_width: -tab_width $param_tab_width #end if #if $param_first_column: -first_column $param_first_column #end if #if $adv_opts.adv_opts_selector=='advanced': #if $rep_param_whitelist: -whitelist #for token in $rep_param_whitelist: #if " " in str(token): "$token.param_whitelist" #else $token.param_whitelist #end if #end for #end if #if $rep_param_matched_whitelist: -matched_whitelist #for token in $rep_param_matched_whitelist: #if " " in str(token): "$token.param_matched_whitelist" #else $token.param_matched_whitelist #end if #end for #end if #if $adv_opts.param_force: -force #end if #end if > $param_stdout ]]></command> <inputs> <param name="param_in1" type="data" format="txt" label="first input file" help="(-in1) "/> <param name="param_in2" type="data" format="txt" label="second input file" help="(-in2) "/> <param name="param_ratio" type="float" min="1.0" optional="True" value="1.0" label="acceptable relative erro" help="(-ratio) Only one of 'ratio' or 'absdiff' has to be satisfied. Use "absdiff" to deal with cases like "zero vs. epsilon""/> <param name="param_absdiff" type="float" min="0.0" optional="True" value="0.0" label="acceptable absolute difference" help="(-absdiff) Only one of 'ratio' or 'absdiff' has to be satisfied. "/> <param name="param_verbose" type="integer" min="0" max="3" optional="True" value="2" label="set verbose level: <br>0 = very quiet mode (absolutely no output) <br>1 = quiet mode (no output unless differences detected) <br>2 = default (include summary at end) <br>3 = continue after errors" help="(-verbose) "/> <param name="param_tab_width" type="integer" min="1" optional="True" value="8" label="tabulator width, used for calculation of column numbers" help="(-tab_width) "/> <param name="param_first_column" type="integer" min="0" optional="True" value="1" label="number of first column, used for calculation of column numbers" help="(-first_column) "/> <expand macro="advanced_options"> <repeat name="rep_param_whitelist" min="0" max="1" title="param_whitelist"> <param name="param_whitelist" type="text" size="30" value="<?xml-stylesheet" label="Lines containing one of these strings are skipped" help="(-whitelist) "> <sanitizer> <valid initial="string.printable"> <remove value="'"/> <remove value="""/> </valid> </sanitizer> </param> </repeat> <repeat name="rep_param_matched_whitelist" min="0" title="param_matched_whitelist"> <param name="param_matched_whitelist" type="text" size="30" label="Lines where one file contains one string and the other file another string are skipped. Input is given as list of colon separated tuples," help="(-matched_whitelist) e.g. String1:String2 String3:String4"> <sanitizer> <valid initial="string.printable"> <remove value="'"/> <remove value="""/> </valid> </sanitizer> </param> </repeat> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_stdout" format="txt" label="Output from stdout"/> </outputs> <help>Compares two files, tolerating numeric differences. For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_FuzzyDiff.html</help> </tool>