Mercurial > repos > galaxyp > openms_gnpsexport

comparison GNPSExport.xml @ 2:2dabae2814df draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:15:16 +0000
parents 22885d201eb8
children 2da14ae3844a
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1:d3cbea30faa4 2:2dabae2814df
56 <param name="precursor_rt_tolerance" argument="-precursor_rt_tolerance" type="float" optional="true" value="5.0" label="Tolerance rt window for precursor selection" help=""/> 56 <param name="precursor_rt_tolerance" argument="-precursor_rt_tolerance" type="float" optional="true" value="5.0" label="Tolerance rt window for precursor selection" help=""/>
57 <section name="merged_spectra" title="Options for exporting mgf file with merged spectra per feature" help="" expanded="false"> 57 <section name="merged_spectra" title="Options for exporting mgf file with merged spectra per feature" help="" expanded="false">
58 <param name="cos_similarity" argument="-merged_spectra:cos_similarity" type="float" optional="true" value="0.95" label="Cosine similarity threshold for merged_spectra output" help=""/> 58 <param name="cos_similarity" argument="-merged_spectra:cos_similarity" type="float" optional="true" value="0.95" label="Cosine similarity threshold for merged_spectra output" help=""/>
59 </section> 59 </section>
60 <expand macro="adv_opts_macro"> 60 <expand macro="adv_opts_macro">
61 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 61 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
62 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 62 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
63 <expand macro="list_string_san"/> 63 <expand macro="list_string_san"/>
64 </param> 64 </param>
65 </expand> 65 </expand>
66 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 66 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
67 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 67 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
68 </param> 68 </param>
69 </inputs> 69 </inputs>
70 <outputs> 70 <outputs>
71 <data name="out" label="${tool.name} on ${on_string}: out" format="mgf"/> 71 <data name="out" label="${tool.name} on ${on_string}: out" format="mgf"/>