Mercurial > repos > galaxyp > openms_highresprecursormasscorrector
comparison HighResPrecursorMassCorrector.xml @ 13:cdbd06d8cbd5 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author | galaxyp |
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date | Tue, 13 Oct 2020 20:28:49 +0000 |
parents | 8962ca0b2456 |
children | d3546bb9fd8e |
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12:829a9a4318c8 | 13:cdbd06d8cbd5 |
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92 <option value="ppm" selected="true">ppm</option> | 92 <option value="ppm" selected="true">ppm</option> |
93 <expand macro="list_string_san"/> | 93 <expand macro="list_string_san"/> |
94 </param> | 94 </param> |
95 </section> | 95 </section> |
96 <expand macro="adv_opts_macro"> | 96 <expand macro="adv_opts_macro"> |
97 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> | 97 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> |
98 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> | 98 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> |
99 <expand macro="list_string_san"/> | 99 <expand macro="list_string_san"/> |
100 </param> | 100 </param> |
101 </expand> | 101 </expand> |
102 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> | 102 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> |
103 <option value="out_csv_FLAG">out_csv (Unit of precursor mass tolerance)</option> | 103 <option value="out_csv_FLAG">out_csv (Optional CSV output file for results on 'nearest_peak' or 'highest_intensity_peak' algorithm (see corresponding subsection) containing columns: RT, uncorrectedMZ, correctedMZ, deltaMZ)</option> |
104 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> | 104 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> |
105 </param> | 105 </param> |
106 </inputs> | 106 </inputs> |
107 <outputs> | 107 <outputs> |
108 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> | 108 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> |
118 <expand macro="manutest_HighResPrecursorMassCorrector"/> | 118 <expand macro="manutest_HighResPrecursorMassCorrector"/> |
119 </tests> | 119 </tests> |
120 <help><![CDATA[Corrects the precursor mass and charge determined by the instrument software. | 120 <help><![CDATA[Corrects the precursor mass and charge determined by the instrument software. |
121 | 121 |
122 | 122 |
123 For more information, visit http://www.openms.de/documentation/TOPP_HighResPrecursorMassCorrector.html]]></help> | 123 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_HighResPrecursorMassCorrector.html]]></help> |
124 <expand macro="references"/> | 124 <expand macro="references"/> |
125 </tool> | 125 </tool> |