Mercurial > repos > galaxyp > openms_highresprecursormasscorrector

comparison HighResPrecursorMassCorrector.xml @ 13:cdbd06d8cbd5 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:28:49 +0000
parents 8962ca0b2456
children d3546bb9fd8e
comparison
equal deleted inserted replaced
12:829a9a4318c8 13:cdbd06d8cbd5
92 <option value="ppm" selected="true">ppm</option> 92 <option value="ppm" selected="true">ppm</option>
93 <expand macro="list_string_san"/> 93 <expand macro="list_string_san"/>
94 </param> 94 </param>
95 </section> 95 </section>
96 <expand macro="adv_opts_macro"> 96 <expand macro="adv_opts_macro">
97 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 97 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
98 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 98 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
99 <expand macro="list_string_san"/> 99 <expand macro="list_string_san"/>
100 </param> 100 </param>
101 </expand> 101 </expand>
102 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 102 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
103 <option value="out_csv_FLAG">out_csv (Unit of precursor mass tolerance)</option> 103 <option value="out_csv_FLAG">out_csv (Optional CSV output file for results on 'nearest_peak' or 'highest_intensity_peak' algorithm (see corresponding subsection) containing columns: RT, uncorrectedMZ, correctedMZ, deltaMZ)</option>
104 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 104 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
105 </param> 105 </param>
106 </inputs> 106 </inputs>
107 <outputs> 107 <outputs>
108 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> 108 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>
118 <expand macro="manutest_HighResPrecursorMassCorrector"/> 118 <expand macro="manutest_HighResPrecursorMassCorrector"/>
119 </tests> 119 </tests>
120 <help><![CDATA[Corrects the precursor mass and charge determined by the instrument software. 120 <help><![CDATA[Corrects the precursor mass and charge determined by the instrument software.
121 121
122 122
123 For more information, visit http://www.openms.de/documentation/TOPP_HighResPrecursorMassCorrector.html]]></help> 123 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_HighResPrecursorMassCorrector.html]]></help>
124 <expand macro="references"/> 124 <expand macro="references"/>
125 </tool> 125 </tool>