--- a/HighResPrecursorMassCorrector.xml	Thu Apr 27 13:22:30 2017 -0400
+++ b/HighResPrecursorMassCorrector.xml	Wed Aug 09 09:53:30 2017 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
 <!--Proposed Tool Section: [Signal processing and preprocessing]-->
-<tool id="HighResPrecursorMassCorrector" name="HighResPrecursorMassCorrector" version="2.1.0">
+<tool id="HighResPrecursorMassCorrector" name="HighResPrecursorMassCorrector" version="2.2.0">
   <description>Corrects the precursor mass and charge determined by the instrument software.</description>
   <macros>
     <token name="@EXECUTABLE@">HighResPrecursorMassCorrector</token>
@@ -58,6 +58,9 @@
     $param_nearest_peak_mz_tolerance_unit
   #end if
 #end if
+#if $param_highest_intensity_peak_mz_tolerance:
+  -highest_intensity_peak:mz_tolerance $param_highest_intensity_peak_mz_tolerance
+#end if
 #if $adv_opts.adv_opts_selector=='advanced':
     #if $adv_opts.param_force:
   -force
@@ -79,11 +82,12 @@
     <param name="param_feature_believe_charge" display="radio" type="boolean" truevalue="-feature:believe_charge" falsevalue="" checked="false" optional="True" label="Assume precursor charge to be correct" help="(-believe_charge) "/>
     <param name="param_feature_keep_original" display="radio" type="boolean" truevalue="-feature:keep_original" falsevalue="" checked="false" optional="True" label="Make a copy of the precursor and MS2 (true) or discard the original (false)" help="(-keep_original) "/>
     <param name="param_feature_assign_all_matching" display="radio" type="boolean" truevalue="-feature:assign_all_matching" falsevalue="" checked="false" optional="True" label="Correct a precursor using all matching features (true) or only the nearest (false)" help="(-assign_all_matching) Only evaluated if copies are created (feature:keep_original)"/>
-    <param name="param_nearest_peak_mz_tolerance" type="float" value="0.0" label="The precursor mass tolerance to find the closest MS1 peak" help="(-mz_tolerance) Set to 0.0 to disable"/>
+    <param name="param_nearest_peak_mz_tolerance" type="float" value="0.0" label="The precursor mass tolerance to find the closest MS1 peak" help="(-mz_tolerance) (Disable method by setting value to 0.0)"/>
     <param name="param_nearest_peak_mz_tolerance_unit" display="radio" type="select" optional="False" value="ppm" label="Unit of precursor mass tolerance" help="(-mz_tolerance_unit) ">
       <option value="Da">Da</option>
       <option value="ppm" selected="true">ppm</option>
     </param>
+    <param name="param_highest_intensity_peak_mz_tolerance" type="float" value="0.0" label="The precursor mass tolerance to find the highest intensity MS1 peak (Da)" help="(-mz_tolerance) Suggested value 1/max. expected charge. (Disable method by setting value to 0.0)"/>
     <expand macro="advanced_options">
       <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
       <param name="param_feature_max_trace" type="integer" value="2" label="Maximum isotopic trace considered in matching a precursor to a feature" help="(-max_trace) "/>