Mercurial > repos > galaxyp > openms_iddecoyprobability

comparison IDDecoyProbability.xml @ 9:6e015d261b45 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:15:40 -0400
parents 593aea658c0a
children
comparison
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8:482d057a9a22 9:6e015d261b45
9 <import>macros.xml</import> 9 <import>macros.xml</import>
10 </macros> 10 </macros>
11 <expand macro="references"/> 11 <expand macro="references"/>
12 <expand macro="stdio"/> 12 <expand macro="stdio"/>
13 <expand macro="requirements"/> 13 <expand macro="requirements"/>
14 <command>IDDecoyProbability 14 <command detect_errors="aggressive"><![CDATA[IDDecoyProbability
15 15
16 #if $param_in: 16 #if $param_in:
17 -in $param_in 17 -in $param_in
18 #end if 18 #end if
19 #if $param_fwd_in: 19 #if $param_fwd_in:
34 #end if 34 #end if
35 #if $adv_opts.param_decoy_algorithm_lower_score_better_default_value_if_zero: 35 #if $adv_opts.param_decoy_algorithm_lower_score_better_default_value_if_zero:
36 -decoy_algorithm:lower_score_better_default_value_if_zero $adv_opts.param_decoy_algorithm_lower_score_better_default_value_if_zero 36 -decoy_algorithm:lower_score_better_default_value_if_zero $adv_opts.param_decoy_algorithm_lower_score_better_default_value_if_zero
37 #end if 37 #end if
38 #end if 38 #end if
39 </command> 39 ]]></command>
40 <inputs> 40 <inputs>
41 <param name="param_in" type="data" format="idxml" optional="True" label="Identification input of combined forward decoy search (reindex with PeptideIndexer first)" help="(-in) "/> 41 <param name="param_in" type="data" format="idxml" optional="True" label="Identification input of combined forward decoy search (reindex with PeptideIndexer first)" help="(-in) "/>
42 <param name="param_fwd_in" type="data" format="idxml" optional="True" label="Identification input of forward run" help="(-fwd_in) "/> 42 <param name="param_fwd_in" type="data" format="idxml" optional="True" label="Identification input of forward run" help="(-fwd_in) "/>
43 <param name="param_rev_in" type="data" format="idxml" optional="True" label="Identification input of decoy run" help="(-rev_in) "/> 43 <param name="param_rev_in" type="data" format="idxml" optional="True" label="Identification input of decoy run" help="(-rev_in) "/>
44 <expand macro="advanced_options"> 44 <expand macro="advanced_options">
52 </outputs> 52 </outputs>
53 <help>Estimates peptide probabilities using a decoy search strategy. 53 <help>Estimates peptide probabilities using a decoy search strategy.
54 WARNING: This util is deprecated. 54 WARNING: This util is deprecated.
55 55
56 56
57 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_IDDecoyProbability.html</help> 57 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_IDDecoyProbability.html</help>
58 </tool> 58 </tool>