Mercurial > repos > galaxyp > openms_idextractor

comparison IDExtractor.xml @ 13:2a2fa2b57306 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:50:00 +0000
parents d1d410b94443
children 589bf635f424
comparison
equal deleted inserted replaced
12:8118e5780beb 13:2a2fa2b57306
44 <param name="in" argument="-in" type="data" format="idxml" optional="false" label="input file" help=" select idxml data sets(s)"/> 44 <param name="in" argument="-in" type="data" format="idxml" optional="false" label="input file" help=" select idxml data sets(s)"/>
45 <param name="number_of_peptides" argument="-number_of_peptides" type="integer" optional="true" min="1" value="10" label="Number of randomly chosen peptides" help=""/> 45 <param name="number_of_peptides" argument="-number_of_peptides" type="integer" optional="true" min="1" value="10" label="Number of randomly chosen peptides" help=""/>
46 <param name="number_of_rand_invokations" argument="-number_of_rand_invokations" type="integer" optional="true" min="0" value="0" label="Number of rand invocations before random draw" help=""/> 46 <param name="number_of_rand_invokations" argument="-number_of_rand_invokations" type="integer" optional="true" min="0" value="0" label="Number of rand invocations before random draw" help=""/>
47 <param name="best_hits" argument="-best_hits" type="boolean" truevalue="true" falsevalue="false" checked="false" label="If this flag is set the best n peptides are chosen" help=""/> 47 <param name="best_hits" argument="-best_hits" type="boolean" truevalue="true" falsevalue="false" checked="false" label="If this flag is set the best n peptides are chosen" help=""/>
48 <expand macro="adv_opts_macro"> 48 <expand macro="adv_opts_macro">
49 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 49 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
50 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 50 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
51 <expand macro="list_string_san"/> 51 <expand macro="list_string_san"/>
52 </param> 52 </param>
53 </expand> 53 </expand>
54 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 54 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
55 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 55 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
56 </param> 56 </param>
57 </inputs> 57 </inputs>
58 <outputs> 58 <outputs>
59 <data name="out" label="${tool.name} on ${on_string}: out" format="idxml"/> 59 <data name="out" label="${tool.name} on ${on_string}: out" format="idxml"/>
66 <expand macro="manutest_IDExtractor"/> 66 <expand macro="manutest_IDExtractor"/>
67 </tests> 67 </tests>
68 <help><![CDATA[Extracts 'n' peptides randomly or best 'n' from idXML files. 68 <help><![CDATA[Extracts 'n' peptides randomly or best 'n' from idXML files.
69 69
70 70
71 For more information, visit http://www.openms.de/documentation/UTILS_IDExtractor.html]]></help> 71 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_IDExtractor.html]]></help>
72 <expand macro="references"/> 72 <expand macro="references"/>
73 </tool> 73 </tool>