Mercurial > repos > galaxyp > openms_idextractor
diff 404-urls.patch @ 13:2a2fa2b57306 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
| author | galaxyp |
|---|---|
| date | Tue, 13 Oct 2020 19:50:00 +0000 |
| parents | 8118e5780beb |
| children |
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--- a/404-urls.patch Thu Sep 24 12:32:04 2020 +0000 +++ b/404-urls.patch Tue Oct 13 19:50:00 2020 +0000 @@ -1,65 +1,11 @@ -diff -ruN ClusterMassTracesByPrecursor.xml ClusterMassTracesByPrecursor.xml ---- ClusterMassTracesByPrecursor.xml 2020-09-21 17:02:36.060104555 +0200 -+++ ClusterMassTracesByPrecursor.xml 2020-09-21 17:00:02.864815223 +0200 -@@ -75,8 +75,6 @@ - <expand macro="manutest_ClusterMassTracesByPrecursor"/> - </tests> - <help><![CDATA[Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile. -- -- --For more information, visit http://www.openms.de/documentation/UTILS_ClusterMassTracesByPrecursor.html]]></help> -+]]></help> - <expand macro="references"/> - </tool> -diff -ruN ClusterMassTraces.xml ClusterMassTraces.xml ---- ClusterMassTraces.xml 2020-09-21 17:02:36.060104555 +0200 -+++ ClusterMassTraces.xml 2020-09-21 17:00:22.192722036 +0200 -@@ -69,8 +69,6 @@ - <expand macro="manutest_ClusterMassTraces"/> - </tests> - <help><![CDATA[Creates pseudo spectra. -- -- --For more information, visit http://www.openms.de/documentation/UTILS_ClusterMassTraces.html]]></help> -+]]></help> +diff -ruN FeatureFinderSuperHirn.xml FeatureFinderSuperHirn.xml +--- FeatureFinderSuperHirn.xml 2020-10-02 12:06:56.398572301 +0200 ++++ FeatureFinderSuperHirn.xml 2020-10-02 12:07:31.511153834 +0200 +@@ -105,6 +105,6 @@ + <help><![CDATA[Finds mass spectrometric features in mass spectra. + + +-For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_FeatureFinderSuperHirn.html]]></help> ++For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.6.0/html/UTILS_FeatureFinderSuperHirn.html]]></help> <expand macro="references"/> </tool> -diff -ruN FeatureFinderSuperHirn.xml FeatureFinderSuperHirn.xml ---- FeatureFinderSuperHirn.xml 2020-09-21 17:02:36.060104555 +0200 -+++ FeatureFinderSuperHirn.xml 2020-09-21 17:00:42.372625907 +0200 -@@ -103,8 +103,6 @@ - <expand macro="manutest_FeatureFinderSuperHirn"/> - </tests> - <help><![CDATA[Finds mass spectrometric features in mass spectra. -- -- --For more information, visit http://www.openms.de/documentation/TOPP_FeatureFinderSuperHirn.html]]></help> -+]]></help> - <expand macro="references"/> - </tool> -diff -ruN MSFraggerAdapter.xml MSFraggerAdapter.xml ---- MSFraggerAdapter.xml 2020-09-21 17:02:36.060104555 +0200 -+++ MSFraggerAdapter.xml 2020-09-21 17:01:04.892519985 +0200 -@@ -250,8 +250,6 @@ - <expand macro="manutest_MSFraggerAdapter"/> - </tests> - <help><![CDATA[Peptide Identification with MSFragger -- -- --For more information, visit http://www.openms.de/documentation/UTILS_MSFraggerAdapter.html]]></help> -+]]></help> - <expand macro="references"/> - </tool> -diff -ruN SimpleSearchEngine.xml SimpleSearchEngine.xml ---- SimpleSearchEngine.xml 2020-09-21 17:02:36.060104555 +0200 -+++ SimpleSearchEngine.xml 2020-09-21 17:01:33.020389600 +0200 -@@ -5373,8 +5373,6 @@ - <expand macro="manutest_SimpleSearchEngine"/> - </tests> - <help><![CDATA[Annotates MS/MS spectra using SimpleSearchEngine. -- -- --For more information, visit http://www.openms.de/documentation/UTILS_SimpleSearchEngine.html]]></help> -+]]></help> - <expand macro="references"/> - </tool>