Mercurial > repos > galaxyp > openms_idextractor
view IDExtractor.xml @ 6:0b1a794f0269 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 8a95bc868914fb41c7452907f73a9273b03286ab
author | galaxyp |
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date | Thu, 11 Jan 2018 18:17:06 -0500 |
parents | 20d8fceb0c05 |
children | b18310842a0a |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Utilities]--> <tool id="IDExtractor" name="IDExtractor" version="2.2.0"> <description>Extracts 'n' peptides randomly or best 'n' from idXML files.</description> <macros> <token name="@EXECUTABLE@">IDExtractor</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command>IDExtractor #if $param_in: -in $param_in #end if #if $param_out: -out $param_out #end if #if $param_number_of_peptides: -number_of_peptides $param_number_of_peptides #end if #if $param_number_of_rand_invokations: -number_of_rand_invokations $param_number_of_rand_invokations #end if #if $param_best_hits: -best_hits #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if </command> <inputs> <param name="param_in" type="data" format="idxml" optional="False" label="input file" help="(-in) "/> <param name="param_number_of_peptides" type="integer" min="1" optional="True" value="10" label="Number of randomly chosen peptides" help="(-number_of_peptides) "/> <param name="param_number_of_rand_invokations" type="integer" min="0" optional="True" value="0" label="Number of rand invocations before random draw" help="(-number_of_rand_invokations) "/> <param name="param_best_hits" display="radio" type="boolean" truevalue="-best_hits" falsevalue="" checked="false" optional="True" label="If this flag is set the best n peptides are chosen" help="(-best_hits) "/> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="idxml"/> </outputs> <help>Extracts 'n' peptides randomly or best 'n' from idXML files. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_IDExtractor.html</help> </tool>