Mercurial > repos > galaxyp > openms_idmapper

comparison IDMapper.xml @ 13:2517c03f5cd3 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:04:21 +0000
parents 138a734e21a1
children adca857b4884
comparison
equal deleted inserted replaced
12:0bdaa74d9a3a 13:2517c03f5cd3
78 <section name="spectra" title="Additional options for mzML input" help="" expanded="false"> 78 <section name="spectra" title="Additional options for mzML input" help="" expanded="false">
79 <param name="_in" argument="-spectra:_in" type="data" format="mzml" optional="true" label="MS run used to annotated unidentified spectra to features or consensus features" help=" select mzml data sets(s)"/> 79 <param name="_in" argument="-spectra:_in" type="data" format="mzml" optional="true" label="MS run used to annotated unidentified spectra to features or consensus features" help=" select mzml data sets(s)"/>
80 </section> 80 </section>
81 <expand macro="adv_opts_macro"> 81 <expand macro="adv_opts_macro">
82 <param name="ignore_charge" argument="-ignore_charge" type="boolean" truevalue="true" falsevalue="false" checked="false" label="For feature/consensus maps: Assign an ID independently of whether its charge state matches that of the (consensus) feature" help=""/> 82 <param name="ignore_charge" argument="-ignore_charge" type="boolean" truevalue="true" falsevalue="false" checked="false" label="For feature/consensus maps: Assign an ID independently of whether its charge state matches that of the (consensus) feature" help=""/>
83 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 83 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
84 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 84 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
85 <expand macro="list_string_san"/> 85 <expand macro="list_string_san"/>
86 </param> 86 </param>
87 </expand> 87 </expand>
88 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 88 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
89 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 89 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
90 </param> 90 </param>
91 </inputs> 91 </inputs>
92 <outputs> 92 <outputs>
93 <data name="out" label="${tool.name} on ${on_string}: out" format_source="in" metadata_source="in"/> 93 <data name="out" label="${tool.name} on ${on_string}: out" format_source="in" metadata_source="in"/>
100 <expand macro="manutest_IDMapper"/> 100 <expand macro="manutest_IDMapper"/>
101 </tests> 101 </tests>
102 <help><![CDATA[Assigns protein/peptide identifications to features or consensus features. 102 <help><![CDATA[Assigns protein/peptide identifications to features or consensus features.
103 103
104 104
105 For more information, visit http://www.openms.de/documentation/TOPP_IDMapper.html]]></help> 105 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_IDMapper.html]]></help>
106 <expand macro="references"/> 106 <expand macro="references"/>
107 </tool> 107 </tool>