Mercurial > repos > galaxyp > openms_idmassaccuracy

comparison IDMassAccuracy.xml @ 9:86f5365280dd draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:30:47 -0400
parents 2c96363c5a17
children 65be0674bb70
comparison
equal deleted inserted replaced
8:3750c20d0d50 9:86f5365280dd
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>IDMassAccuracy 13 <command detect_errors="aggressive"><![CDATA[IDMassAccuracy
14 14
15 -in 15 -in
16 #for token in $param_in: 16 #for token in $param_in:
17 $token 17 $token
18 #end for 18 #end for
69 #end if 69 #end if
70 #if $adv_opts.param_force: 70 #if $adv_opts.param_force:
71 -force 71 -force
72 #end if 72 #end if
73 #end if 73 #end if
74 </command> 74 ]]></command>
75 <inputs> 75 <inputs>
76 <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input mzML file list, containing the spectra" help="(-in) "> 76 <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input mzML file list, containing the spectra" help="(-in) ">
77 <sanitizer> 77 <sanitizer>
78 <valid initial="string.printable"> 78 <valid initial="string.printable">
79 <remove value="'"/> 79 <remove value="'"/>
121 <data name="param_fragment_out" format="tabular"/> 121 <data name="param_fragment_out" format="tabular"/>
122 </outputs> 122 </outputs>
123 <help>Calculates a distribution of the mass error from given mass spectra and IDs. 123 <help>Calculates a distribution of the mass error from given mass spectra and IDs.
124 124
125 125
126 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_IDMassAccuracy.html</help> 126 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_IDMassAccuracy.html</help>
127 </tool> 127 </tool>