Mercurial > repos > galaxyp > openms_idmassaccuracy
diff IDMassAccuracy.xml @ 13:31bc4129f589 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author | galaxyp |
---|---|
date | Tue, 13 Oct 2020 20:32:01 +0000 |
parents | 65be0674bb70 |
children | 585f8235da7e |
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--- a/IDMassAccuracy.xml Thu Sep 24 12:27:04 2020 +0000 +++ b/IDMassAccuracy.xml Tue Oct 13 20:32:01 2020 +0000 @@ -91,16 +91,16 @@ <param name="fragment_mass_tolerance" argument="-fragment_mass_tolerance" type="float" optional="true" value="0.5" label="Maximal fragment mass tolerance which is allowed for MS/MS spectra, used for the calculation of matching ions" help=""/> <expand macro="adv_opts_macro"> <param name="number_of_bins" argument="-number_of_bins" type="integer" optional="true" min="10" value="100" label="Number of bins that should be used to calculate the histograms for the fitting" help=""/> - <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> + <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> <expand macro="list_string_san"/> </param> </expand> - <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="false"> - <option value="out_precursor_FLAG">out_precursor (Enables the test mode (needed for internal use only))</option> - <option value="out_fragment_FLAG">out_fragment (Enables the test mode (needed for internal use only))</option> - <option value="out_precursor_fit_FLAG">out_precursor_fit (Enables the test mode (needed for internal use only))</option> - <option value="out_fragment_fit_FLAG">out_fragment_fit (Enables the test mode (needed for internal use only))</option> + <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> + <option value="out_precursor_FLAG">out_precursor (Output file which contains the deviations from the precursors)</option> + <option value="out_fragment_FLAG">out_fragment (Output file which contains the fragment ion m/z deviations)</option> + <option value="out_precursor_fit_FLAG">out_precursor_fit (Gaussian fit to the histogram of mass deviations from the precursors)</option> + <option value="out_fragment_fit_FLAG">out_fragment_fit (Gaussian fit to the histogram of mass deviations from the fragments)</option> <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> </param> </inputs> @@ -131,6 +131,6 @@ <help><![CDATA[Calculates a distribution of the mass error from given mass spectra and IDs. -For more information, visit http://www.openms.de/documentation/UTILS_IDMassAccuracy.html]]></help> +For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_IDMassAccuracy.html]]></help> <expand macro="references"/> </tool>