Mercurial > repos > galaxyp > openms_idripper

comparison IDRipper.xml @ 7:66abff058095 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:09:13 -0400
parents 2b74ab49b619
children b50cc9d1d1a9
comparison
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6:30dd22f321cc 7:66abff058095
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>IDRipper 13 <command detect_errors="aggressive"><![CDATA[IDRipper
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
24 #if $adv_opts.adv_opts_selector=='advanced': 24 #if $adv_opts.adv_opts_selector=='advanced':
25 #if $adv_opts.param_force: 25 #if $adv_opts.param_force:
26 -force 26 -force
27 #end if 27 #end if
28 #end if 28 #end if
29 </command> 29 ]]></command>
30 <inputs> 30 <inputs>
31 <param name="param_in" type="data" format="idxml" optional="False" label="Input file, in which the protein/peptide identifications must be tagged with 'file_origin'" help="(-in) "/> 31 <param name="param_in" type="data" format="idxml" optional="False" label="Input file, in which the protein/peptide identifications must be tagged with 'file_origin'" help="(-in) "/>
32 <param name="param_out_path" type="text" size="30" label="Directory for the output files after ripping according to 'file_origin'" help="(-out_path) If 'out_path' is set, 'out' is ignored"> 32 <param name="param_out_path" type="text" size="30" label="Directory for the output files after ripping according to 'file_origin'" help="(-out_path) If 'out_path' is set, 'out' is ignored">
33 <sanitizer> 33 <sanitizer>
34 <valid initial="string.printable"> 34 <valid initial="string.printable">
45 <data name="param_out" format="idxml"/> 45 <data name="param_out" format="idxml"/>
46 </outputs> 46 </outputs>
47 <help>Split protein/peptide identification file into several files according to annotated file origin. 47 <help>Split protein/peptide identification file into several files according to annotated file origin.
48 48
49 49
50 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDRipper.html</help> 50 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_IDRipper.html</help>
51 </tool> 51 </tool>