Mercurial > repos > galaxyp > openms_idripper
comparison IDRipper.xml @ 7:66abff058095 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Wed, 15 May 2019 08:09:13 -0400 |
parents | 2b74ab49b619 |
children | b50cc9d1d1a9 |
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6:30dd22f321cc | 7:66abff058095 |
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8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>IDRipper | 13 <command detect_errors="aggressive"><![CDATA[IDRipper |
14 | 14 |
15 #if $param_in: | 15 #if $param_in: |
16 -in $param_in | 16 -in $param_in |
17 #end if | 17 #end if |
18 #if $param_out: | 18 #if $param_out: |
24 #if $adv_opts.adv_opts_selector=='advanced': | 24 #if $adv_opts.adv_opts_selector=='advanced': |
25 #if $adv_opts.param_force: | 25 #if $adv_opts.param_force: |
26 -force | 26 -force |
27 #end if | 27 #end if |
28 #end if | 28 #end if |
29 </command> | 29 ]]></command> |
30 <inputs> | 30 <inputs> |
31 <param name="param_in" type="data" format="idxml" optional="False" label="Input file, in which the protein/peptide identifications must be tagged with 'file_origin'" help="(-in) "/> | 31 <param name="param_in" type="data" format="idxml" optional="False" label="Input file, in which the protein/peptide identifications must be tagged with 'file_origin'" help="(-in) "/> |
32 <param name="param_out_path" type="text" size="30" label="Directory for the output files after ripping according to 'file_origin'" help="(-out_path) If 'out_path' is set, 'out' is ignored"> | 32 <param name="param_out_path" type="text" size="30" label="Directory for the output files after ripping according to 'file_origin'" help="(-out_path) If 'out_path' is set, 'out' is ignored"> |
33 <sanitizer> | 33 <sanitizer> |
34 <valid initial="string.printable"> | 34 <valid initial="string.printable"> |
45 <data name="param_out" format="idxml"/> | 45 <data name="param_out" format="idxml"/> |
46 </outputs> | 46 </outputs> |
47 <help>Split protein/peptide identification file into several files according to annotated file origin. | 47 <help>Split protein/peptide identification file into several files according to annotated file origin. |
48 | 48 |
49 | 49 |
50 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDRipper.html</help> | 50 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_IDRipper.html</help> |
51 </tool> | 51 </tool> |