Mercurial > repos > galaxyp > openms_idripper
comparison IDRipper.xml @ 0:9af6146f168b draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
| author | galaxyp |
|---|---|
| date | Wed, 01 Mar 2017 12:17:09 -0500 |
| parents | |
| children | a7baf45f8ba5 |
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| -1:000000000000 | 0:9af6146f168b |
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| 1 <?xml version='1.0' encoding='UTF-8'?> | |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | |
| 3 <!--Proposed Tool Section: [File Handling]--> | |
| 4 <tool id="IDRipper" name="IDRipper" version="2.1.0"> | |
| 5 <description>Split protein/peptide identification file into several files according to annotated file origin.</description> | |
| 6 <macros> | |
| 7 <token name="@EXECUTABLE@">IDRipper</token> | |
| 8 <import>macros.xml</import> | |
| 9 </macros> | |
| 10 <expand macro="references"/> | |
| 11 <expand macro="stdio"/> | |
| 12 <expand macro="requirements"/> | |
| 13 <command>IDRipper | |
| 14 | |
| 15 #if $param_in: | |
| 16 -in $param_in | |
| 17 #end if | |
| 18 #if $param_out: | |
| 19 -out $param_out | |
| 20 #end if | |
| 21 #if $param_out_path: | |
| 22 -out_path "$param_out_path" | |
| 23 #end if | |
| 24 #if $adv_opts.adv_opts_selector=='advanced': | |
| 25 #if $adv_opts.param_force: | |
| 26 -force | |
| 27 #end if | |
| 28 #end if | |
| 29 </command> | |
| 30 <inputs> | |
| 31 <param name="param_in" type="data" format="idxml" optional="False" label="Input file, in which the protein/peptide identifications must be tagged with 'file_origin'" help="(-in) "/> | |
| 32 <param name="param_out_path" type="text" size="30" label="Directory for the output files after ripping according to 'file_origin'" help="(-out_path) If 'out_path' is set, 'out' is ignored"> | |
| 33 <sanitizer> | |
| 34 <valid initial="string.printable"> | |
| 35 <remove value="'"/> | |
| 36 <remove value="""/> | |
| 37 </valid> | |
| 38 </sanitizer> | |
| 39 </param> | |
| 40 <expand macro="advanced_options"> | |
| 41 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> | |
| 42 </expand> | |
| 43 </inputs> | |
| 44 <outputs> | |
| 45 <data name="param_out" format="idxml"/> | |
| 46 </outputs> | |
| 47 <help>Split protein/peptide identification file into several files according to annotated file origin. | |
| 48 | |
| 49 | |
| 50 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDRipper.html</help> | |
| 51 </tool> |