Mercurial > repos > galaxyp > openms_idripper

comparison IDRipper.xml @ 11:b017e7bd2316 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:33:27 +0000
parents b50cc9d1d1a9
children 7960e660446e
comparison
equal deleted inserted replaced
10:3721c6380979 11:b017e7bd2316
40 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile> 40 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile>
41 </configfiles> 41 </configfiles>
42 <inputs> 42 <inputs>
43 <param name="in" argument="-in" type="data" format="idxml" optional="false" label="Input file, in which the protein/peptide identifications must be tagged with 'file_origin'" help=" select idxml data sets(s)"/> 43 <param name="in" argument="-in" type="data" format="idxml" optional="false" label="Input file, in which the protein/peptide identifications must be tagged with 'file_origin'" help=" select idxml data sets(s)"/>
44 <expand macro="adv_opts_macro"> 44 <expand macro="adv_opts_macro">
45 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 45 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
46 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 46 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
47 <expand macro="list_string_san"/> 47 <expand macro="list_string_san"/>
48 </param> 48 </param>
49 </expand> 49 </expand>
50 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 50 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
51 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 51 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
52 </param> 52 </param>
53 </inputs> 53 </inputs>
54 <outputs> 54 <outputs>
55 <collection type="list" name="out_path" label="${tool.name} on ${on_string}: out_path"> 55 <collection type="list" name="out_path" label="${tool.name} on ${on_string}: out_path">
64 <expand macro="manutest_IDRipper"/> 64 <expand macro="manutest_IDRipper"/>
65 </tests> 65 </tests>
66 <help><![CDATA[Split protein/peptide identification file into several files according to annotated file origin. 66 <help><![CDATA[Split protein/peptide identification file into several files according to annotated file origin.
67 67
68 68
69 For more information, visit http://www.openms.de/documentation/TOPP_IDRipper.html]]></help> 69 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_IDRipper.html]]></help>
70 <expand macro="references"/> 70 <expand macro="references"/>
71 </tool> 71 </tool>