Mercurial > repos > galaxyp > openms_idrtcalibration

comparison IDRTCalibration.xml @ 12:28805cf9b024 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:15:58 +0000
parents 8bd1fe67a9b1
children 7ff821b34ebc
comparison
equal deleted inserted replaced
11:4215810bb49d 12:28805cf9b024
45 <param name="calibrant_1_reference" argument="-calibrant_1_reference" type="float" optional="true" value="0.1" label="The RT of the first calibrant in the reference file" help=""/> 45 <param name="calibrant_1_reference" argument="-calibrant_1_reference" type="float" optional="true" value="0.1" label="The RT of the first calibrant in the reference file" help=""/>
46 <param name="calibrant_2_reference" argument="-calibrant_2_reference" type="float" optional="true" value="0.9" label="The RT of the second calibrant in the reference file" help=""/> 46 <param name="calibrant_2_reference" argument="-calibrant_2_reference" type="float" optional="true" value="0.9" label="The RT of the second calibrant in the reference file" help=""/>
47 <param name="calibrant_1_input" argument="-calibrant_1_input" type="float" optional="true" value="-1.0" label="The RT of the first calibrant in the input file" help="Please note that this value needs to be set. The default value -1.0 is not allowed"/> 47 <param name="calibrant_1_input" argument="-calibrant_1_input" type="float" optional="true" value="-1.0" label="The RT of the first calibrant in the input file" help="Please note that this value needs to be set. The default value -1.0 is not allowed"/>
48 <param name="calibrant_2_input" argument="-calibrant_2_input" type="float" optional="true" value="-1.0" label="The RT of the second calibrant in the input file" help="Please note that this value needs to be set. The default value -1.0 is not allowed"/> 48 <param name="calibrant_2_input" argument="-calibrant_2_input" type="float" optional="true" value="-1.0" label="The RT of the second calibrant in the input file" help="Please note that this value needs to be set. The default value -1.0 is not allowed"/>
49 <expand macro="adv_opts_macro"> 49 <expand macro="adv_opts_macro">
50 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 50 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
51 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 51 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
52 <expand macro="list_string_san"/> 52 <expand macro="list_string_san"/>
53 </param> 53 </param>
54 </expand> 54 </expand>
55 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 55 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
56 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 56 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
57 </param> 57 </param>
58 </inputs> 58 </inputs>
59 <outputs> 59 <outputs>
60 <data name="out" label="${tool.name} on ${on_string}: out" format="idxml"/> 60 <data name="out" label="${tool.name} on ${on_string}: out" format="idxml"/>
67 <expand macro="manutest_IDRTCalibration"/> 67 <expand macro="manutest_IDRTCalibration"/>
68 </tests> 68 </tests>
69 <help><![CDATA[Can be used to calibrate RTs of peptide hits linearly to standards. 69 <help><![CDATA[Can be used to calibrate RTs of peptide hits linearly to standards.
70 70
71 71
72 For more information, visit http://www.openms.de/documentation/TOPP_IDRTCalibration.html]]></help> 72 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_IDRTCalibration.html]]></help>
73 <expand macro="references"/> 73 <expand macro="references"/>
74 </tool> 74 </tool>