Mercurial > repos > galaxyp > openms_idrtcalibration
view IDRTCalibration.xml @ 8:cb8dd15e2a51 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Wed, 15 May 2019 08:28:31 -0400 |
parents | 47540d47277e |
children | 8bd1fe67a9b1 |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [ID Processing]--> <tool id="IDRTCalibration" name="IDRTCalibration" version="2.3.0"> <description>Can be used to calibrate RTs of peptide hits linearly to standards.</description> <macros> <token name="@EXECUTABLE@">IDRTCalibration</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[IDRTCalibration #if $param_in: -in $param_in #end if #if $param_out: -out $param_out #end if #if $param_calibrant_1_reference: -calibrant_1_reference $param_calibrant_1_reference #end if #if $param_calibrant_2_reference: -calibrant_2_reference $param_calibrant_2_reference #end if #if $param_calibrant_1_input: -calibrant_1_input $param_calibrant_1_input #end if #if $param_calibrant_2_input: -calibrant_2_input $param_calibrant_2_input #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if ]]></command> <inputs> <param name="param_in" type="data" format="idxml" optional="False" label="input file" help="(-in) "/> <param name="param_calibrant_1_reference" type="float" value="0.1" label="The RT of the first calibrant in the reference file" help="(-calibrant_1_reference) "/> <param name="param_calibrant_2_reference" type="float" value="0.9" label="The RT of the second calibrant in the reference file" help="(-calibrant_2_reference) "/> <param name="param_calibrant_1_input" type="float" value="-1.0" label="The RT of the first calibrant in the input file" help="(-calibrant_1_input) Please note that this value needs to be set. The default value -1.0 is not allowed"/> <param name="param_calibrant_2_input" type="float" value="-1.0" label="The RT of the second calibrant in the input file" help="(-calibrant_2_input) Please note that this value needs to be set. The default value -1.0 is not allowed"/> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="idxml"/> </outputs> <help>Can be used to calibrate RTs of peptide hits linearly to standards. For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_IDRTCalibration.html</help> </tool>