Mercurial > repos > galaxyp > openms_inclusionexclusionlistcreator

comparison InclusionExclusionListCreator.xml @ 7:dafcc84d1190 draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author galaxyp
date Fri, 17 May 2019 10:21:42 -0400
parents 55b031e4872d
children
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6:3945ae071262 7:dafcc84d1190
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>InclusionExclusionListCreator 13 <command detect_errors="aggressive"><![CDATA[InclusionExclusionListCreator
14 14
15 #if $param_include: 15 #if $param_include:
16 -include $param_include 16 -include $param_include
17 #end if 17 #end if
18 #if $param_exclude: 18 #if $param_exclude:
156 #if $adv_opts.adv_opts_selector=='advanced': 156 #if $adv_opts.adv_opts_selector=='advanced':
157 #if $adv_opts.param_force: 157 #if $adv_opts.param_force:
158 -force 158 -force
159 #end if 159 #end if
160 #end if 160 #end if
161 </command> 161 ]]></command>
162 <inputs> 162 <inputs>
163 <param name="param_include" type="data" format="featurexml,fasta" optional="True" label="Inclusion list input file in FASTA or featureXML format" help="(-include) "/> 163 <param name="param_include" type="data" format="featurexml,fasta" optional="True" label="Inclusion list input file in FASTA or featureXML format" help="(-include) "/>
164 <param name="param_exclude" type="data" format="featurexml,idxml,fasta" optional="True" label="Exclusion list input file in featureXML, idXML or FASTA format" help="(-exclude) "/> 164 <param name="param_exclude" type="data" format="featurexml,idxml,fasta" optional="True" label="Exclusion list input file in featureXML, idXML or FASTA format" help="(-exclude) "/>
165 <param name="param_rt_model" type="data" format="txt" optional="True" label="RTModel file used for the rt prediction of peptides in FASTA files" help="(-rt_model) "/> 165 <param name="param_rt_model" type="data" format="txt" optional="True" label="RTModel file used for the rt prediction of peptides in FASTA files" help="(-rt_model) "/>
166 <param name="param_pt_model" type="data" format="txt" optional="True" label="PTModel file used for the pt prediction of peptides in FASTA files (only needed for inclusion_strategy PreotinBased_LP)" help="(-pt_model) "/> 166 <param name="param_pt_model" type="data" format="txt" optional="True" label="PTModel file used for the pt prediction of peptides in FASTA files (only needed for inclusion_strategy PreotinBased_LP)" help="(-pt_model) "/>
233 <data name="param_out" format="tabular"/> 233 <data name="param_out" format="tabular"/>
234 </outputs> 234 </outputs>
235 <help>Creates inclusion and/or exclusion lists. 235 <help>Creates inclusion and/or exclusion lists.
236 236
237 237
238 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_InclusionExclusionListCreator.html</help> 238 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_InclusionExclusionListCreator.html</help>
239 </tool> 239 </tool>