Mercurial > repos > galaxyp > openms_inspectadapter
diff InspectAdapter.xml @ 1:15ebe1509e0d draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author | galaxyp |
---|---|
date | Wed, 09 Aug 2017 08:59:58 -0400 |
parents | 4fba18bcca36 |
children | f66061c92e2d |
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--- a/InspectAdapter.xml Wed Mar 01 12:17:24 2017 -0500 +++ b/InspectAdapter.xml Wed Aug 09 08:59:58 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Identification]--> -<tool id="InspectAdapter" name="InspectAdapter" version="2.1.0"> +<tool id="InspectAdapter" name="InspectAdapter" version="2.2.0.1"> <description>Annotates MS/MS spectra using Inspect.</description> <macros> <token name="@EXECUTABLE@">InspectAdapter</token> @@ -120,7 +120,7 @@ #end if </command> <inputs> - <param name="param_in" type="data" format="mzxml" optional="False" label="input file in mzXML or mzData format" help="(-in) <br>Note: In mode 'inspect_out' an Inspect results file is read"/> + <param name="param_in" type="data" format="mzxml,mzData" optional="False" label="input file in mzXML or mzData format" help="(-in) <br>Note: In mode 'inspect_out' an Inspect results file is read"/> <param name="param_inspect_in" display="radio" type="boolean" truevalue="-inspect_in" falsevalue="" checked="false" optional="True" label="if this flag is set the InspectAdapter will read in mzXML, <br>write an Inspect input file and generate a trie database" help="(-inspect_in) "/> <param name="param_inspect_out" display="radio" type="boolean" truevalue="-inspect_out" falsevalue="" checked="false" optional="True" label="if this flag is set the InspectAdapter will read in a Inspect results file <br>and write idXML" help="(-inspect_out) "/> <param name="param_inspect_directory" type="text" size="30" label="the directory in which Inspect is located" help="(-inspect_directory) "> @@ -196,7 +196,7 @@ </valid> </sanitizer> </param> - <param name="param_inspect_input" type="data" format="text" label="name for the input file of Inspect (may only be used in a full run)" help="(-inspect_input) "/> + <param name="param_inspect_input" type="data" format="txt" label="name for the input file of Inspect (may only be used in a full run)" help="(-inspect_input) "/> <param name="param_multicharge" display="radio" type="boolean" truevalue="-multicharge" falsevalue="" checked="false" optional="True" label="attempt to guess the precursor charge and mass, <br>and consider multiple charge states if feasible" help="(-multicharge) "/> <param name="param_max_modifications_pp" type="integer" value="-1" label="number of PTMs permitted in a single peptide" help="(-max_modifications_pp) "/> <param name="param_tag_count" type="integer" value="-1" label="number of tags to generate" help="(-tag_count) "/>