Mercurial > repos > galaxyp > openms_inspectadapter

diff InspectAdapter.xml @ 7:1197d1a4c3f6 draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author galaxyp
date Fri, 17 May 2019 10:23:16 -0400
parents f66061c92e2d
children
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line diff
--- a/InspectAdapter.xml	Tue Mar 20 15:25:11 2018 -0400
+++ b/InspectAdapter.xml	Fri May 17 10:23:16 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>InspectAdapter
+  <command detect_errors="aggressive"><![CDATA[InspectAdapter
 
 #if $param_in:
   -in $param_in
@@ -118,7 +118,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzxml,mzData" optional="False" label="input file in mzXML or mzData format" help="(-in) &lt;br&gt;Note: In mode 'inspect_out' an Inspect results file is read"/>
     <param name="param_inspect_in" display="radio" type="boolean" truevalue="-inspect_in" falsevalue="" checked="false" optional="True" label="if this flag is set the InspectAdapter will read in mzXML, &lt;br&gt;write an Inspect input file and generate a trie database" help="(-inspect_in) "/>
@@ -249,5 +249,5 @@
   <help>Annotates MS/MS spectra using Inspect.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_InspectAdapter.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_InspectAdapter.html</help>
 </tool>