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annotate LabeledEval.xml @ 1:998840212f80 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author galaxyp
date Wed, 09 Aug 2017 09:49:05 -0400
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ee49f806140b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
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3 <!--Proposed Tool Section: [Utilities]-->
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4 <tool id="LabeledEval" name="LabeledEval" version="2.2.0.1">
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5 <description> Evaluation tool for isotope-labeled quantitation experiments.</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">LabeledEval</token>
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8 <import>macros.xml</import>
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9 </macros>
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10 <expand macro="references"/>
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11 <expand macro="stdio"/>
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12 <expand macro="requirements"/>
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13 <command>LabeledEval
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14
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15 #if $param_in:
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16 -in $param_in
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17 #end if
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18 #if $param_truth:
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19 -truth $param_truth
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20 #end if
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21 #if $param_rt_tol:
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22 -rt_tol $param_rt_tol
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23 #end if
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24 #if $param_mz_tol:
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25 -mz_tol $param_mz_tol
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26 #end if
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27 #if $adv_opts.adv_opts_selector=='advanced':
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28 #if $adv_opts.param_force:
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29 -force
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30 #end if
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31 #end if
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32 &gt; $param_stdout
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33 </command>
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34 <inputs>
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35 <param name="param_in" type="data" format="featurexml" optional="False" label="Feature result file" help="(-in) "/>
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36 <param name="param_truth" type="data" format="consensusxml" optional="False" label="Expected result file" help="(-truth) "/>
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37 <param name="param_rt_tol" type="float" value="20.0" label="Maximum allowed retention time deviation" help="(-rt_tol) "/>
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38 <param name="param_mz_tol" type="float" value="0.25" label="Maximum allowed m/z deviation (divided by charge)" help="(-mz_tol) "/>
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39 <expand macro="advanced_options">
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40 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
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41 </expand>
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42 </inputs>
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43 <outputs>
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44 <data name="param_stdout" format="txt" label="Output from stdout"/>
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45 </outputs>
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46 <help> Evaluation tool for isotope-labeled quantitation experiments.
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47
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48
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49 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_LabeledEval.html</help>
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50 </tool>