Mercurial > repos > galaxyp > openms_labeledeval

comparison LabeledEval.xml @ 7:66b1cdb9adaf draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:10:48 -0400
parents 3220ee65b800
children 6af4a3054890
comparison
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6:018cad70b268 7:66b1cdb9adaf
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>LabeledEval 13 <command detect_errors="aggressive"><![CDATA[LabeledEval
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_truth: 18 #if $param_truth:
28 #if $adv_opts.param_force: 28 #if $adv_opts.param_force:
29 -force 29 -force
30 #end if 30 #end if
31 #end if 31 #end if
32 &gt; $param_stdout 32 &gt; $param_stdout
33 </command> 33 ]]></command>
34 <inputs> 34 <inputs>
35 <param name="param_in" type="data" format="featurexml" optional="False" label="Feature result file" help="(-in) "/> 35 <param name="param_in" type="data" format="featurexml" optional="False" label="Feature result file" help="(-in) "/>
36 <param name="param_truth" type="data" format="consensusxml" optional="False" label="Expected result file" help="(-truth) "/> 36 <param name="param_truth" type="data" format="consensusxml" optional="False" label="Expected result file" help="(-truth) "/>
37 <param name="param_rt_tol" type="float" value="20.0" label="Maximum allowed retention time deviation" help="(-rt_tol) "/> 37 <param name="param_rt_tol" type="float" value="20.0" label="Maximum allowed retention time deviation" help="(-rt_tol) "/>
38 <param name="param_mz_tol" type="float" value="0.25" label="Maximum allowed m/z deviation (divided by charge)" help="(-mz_tol) "/> 38 <param name="param_mz_tol" type="float" value="0.25" label="Maximum allowed m/z deviation (divided by charge)" help="(-mz_tol) "/>
44 <data name="param_stdout" format="txt" label="Output from stdout"/> 44 <data name="param_stdout" format="txt" label="Output from stdout"/>
45 </outputs> 45 </outputs>
46 <help> Evaluation tool for isotope-labeled quantitation experiments. 46 <help> Evaluation tool for isotope-labeled quantitation experiments.
47 47
48 48
49 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_LabeledEval.html</help> 49 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_LabeledEval.html</help>
50 </tool> 50 </tool>