Mercurial > repos > galaxyp > openms_labeledeval
comparison LabeledEval.xml @ 0:ee49f806140b draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
| author | galaxyp |
|---|---|
| date | Wed, 01 Mar 2017 12:51:37 -0500 |
| parents | |
| children | 998840212f80 |
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| -1:000000000000 | 0:ee49f806140b |
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| 1 <?xml version='1.0' encoding='UTF-8'?> | |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | |
| 3 <!--Proposed Tool Section: [Utilities]--> | |
| 4 <tool id="LabeledEval" name="LabeledEval" version="2.1.0"> | |
| 5 <description> Evaluation tool for isotope-labeled quantitation experiments.</description> | |
| 6 <macros> | |
| 7 <token name="@EXECUTABLE@">LabeledEval</token> | |
| 8 <import>macros.xml</import> | |
| 9 </macros> | |
| 10 <expand macro="references"/> | |
| 11 <expand macro="stdio"/> | |
| 12 <expand macro="requirements"/> | |
| 13 <command>LabeledEval | |
| 14 | |
| 15 #if $param_in: | |
| 16 -in $param_in | |
| 17 #end if | |
| 18 #if $param_truth: | |
| 19 -truth $param_truth | |
| 20 #end if | |
| 21 #if $param_rt_tol: | |
| 22 -rt_tol $param_rt_tol | |
| 23 #end if | |
| 24 #if $param_mz_tol: | |
| 25 -mz_tol $param_mz_tol | |
| 26 #end if | |
| 27 #if $adv_opts.adv_opts_selector=='advanced': | |
| 28 #if $adv_opts.param_force: | |
| 29 -force | |
| 30 #end if | |
| 31 #end if | |
| 32 > $param_stdout | |
| 33 </command> | |
| 34 <inputs> | |
| 35 <param name="param_in" type="data" format="featurexml" optional="False" label="Feature result file" help="(-in) "/> | |
| 36 <param name="param_truth" type="data" format="consensusxml" optional="False" label="Expected result file" help="(-truth) "/> | |
| 37 <param name="param_rt_tol" type="float" value="20.0" label="Maximum allowed retention time deviation" help="(-rt_tol) "/> | |
| 38 <param name="param_mz_tol" type="float" value="0.25" label="Maximum allowed m/z deviation (divided by charge)" help="(-mz_tol) "/> | |
| 39 <expand macro="advanced_options"> | |
| 40 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> | |
| 41 </expand> | |
| 42 </inputs> | |
| 43 <outputs> | |
| 44 <data name="param_stdout" format="text" label="Output from stdout"/> | |
| 45 </outputs> | |
| 46 <help> Evaluation tool for isotope-labeled quantitation experiments. | |
| 47 | |
| 48 | |
| 49 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_LabeledEval.html</help> | |
| 50 </tool> |