Mercurial > repos > galaxyp > openms_lowmempeakpickerhires_randomaccess

comparison LowMemPeakPickerHiResRandomAccess.xml @ 7:02b21ae6ccf7 draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author galaxyp
date Fri, 17 May 2019 10:21:30 -0400
parents 9050f8fbee85
children
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6:5ef9c166272d 7:02b21ae6ccf7
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>LowMemPeakPickerHiResRandomAccess 13 <command detect_errors="aggressive"><![CDATA[LowMemPeakPickerHiResRandomAccess
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
87 #end if 87 #end if
88 #if $adv_opts.param_algorithm_SignalToNoise_noise_for_empty_window: 88 #if $adv_opts.param_algorithm_SignalToNoise_noise_for_empty_window:
89 -algorithm:SignalToNoise:noise_for_empty_window $adv_opts.param_algorithm_SignalToNoise_noise_for_empty_window 89 -algorithm:SignalToNoise:noise_for_empty_window $adv_opts.param_algorithm_SignalToNoise_noise_for_empty_window
90 #end if 90 #end if
91 #end if 91 #end if
92 </command> 92 ]]></command>
93 <inputs> 93 <inputs>
94 <param name="param_in" type="data" format="mzml" optional="False" label="input profile data file" help="(-in) "/> 94 <param name="param_in" type="data" format="mzml" optional="False" label="input profile data file" help="(-in) "/>
95 <param name="param_algorithm_signal_to_noise" type="float" min="0.0" optional="True" value="0.0" label="Minimal signal-to-noise ratio for a peak to be picked (0.0 disables SNT estimation!)" help="(-signal_to_noise) "/> 95 <param name="param_algorithm_signal_to_noise" type="float" min="0.0" optional="True" value="0.0" label="Minimal signal-to-noise ratio for a peak to be picked (0.0 disables SNT estimation!)" help="(-signal_to_noise) "/>
96 <repeat name="rep_param_algorithm_ms_levels" min="0" max="1" title="param_algorithm_ms_levels"> 96 <repeat name="rep_param_algorithm_ms_levels" min="0" max="1" title="param_algorithm_ms_levels">
97 <param name="param_algorithm_ms_levels" type="text" min="1" optional="True" size="30" value="1" label="List of MS levels for which the peak picking is applied" help="(-ms_levels) Other scans are copied to the output without changes"> 97 <param name="param_algorithm_ms_levels" type="text" min="1" optional="True" size="30" value="1" label="List of MS levels for which the peak picking is applied" help="(-ms_levels) Other scans are copied to the output without changes">
131 <data name="param_out" format="mzml"/> 131 <data name="param_out" format="mzml"/>
132 </outputs> 132 </outputs>
133 <help>Finds mass spectrometric peaks in profile mass spectra. 133 <help>Finds mass spectrometric peaks in profile mass spectra.
134 134
135 135
136 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_LowMemPeakPickerHiResRandomAccess.html</help> 136 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_LowMemPeakPickerHiResRandomAccess.html</help>
137 </tool> 137 </tool>