Mercurial > repos > galaxyp > openms_luciphoradapter

diff LuciphorAdapter.xml @ 7:d7117b5551be draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:45:32 -0400
parents 0e7098caa841
children b67078922766
line wrap: on
line diff
--- a/LuciphorAdapter.xml	Tue Mar 20 15:10:14 2018 -0400
+++ b/LuciphorAdapter.xml	Fri May 17 04:45:32 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>LuciphorAdapter
+  <command detect_errors="aggressive"><![CDATA[LuciphorAdapter
 
 #if $param_in:
   -in $param_in
@@ -113,7 +113,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="Input spectrum file" help="(-in) "/>
     <param name="param_id" type="data" format="idxml" optional="False" label="Protein/peptide identifications file" help="(-id) "/>
@@ -2702,5 +2702,5 @@
   <help>Modification site localisation using LuciPHOr2.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_LuciphorAdapter.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_LuciphorAdapter.html</help>
 </tool>