Mercurial > repos > galaxyp > openms_mapaligneridentification

comparison MapAlignerIdentification.xml @ 6:992bb7e5bf8d draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:30:36 +0000
parents bf50f9eb1dcb
children 8434f070e939
comparison
equal deleted inserted replaced
5:12ae09b3a0b4 6:992bb7e5bf8d
161 <expand macro="list_string_san"/> 161 <expand macro="list_string_san"/>
162 </param> 162 </param>
163 </section> 163 </section>
164 </section> 164 </section>
165 <expand macro="adv_opts_macro"> 165 <expand macro="adv_opts_macro">
166 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 166 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
167 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 167 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
168 <expand macro="list_string_san"/> 168 <expand macro="list_string_san"/>
169 </param> 169 </param>
170 </expand> 170 </expand>
171 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="false"> 171 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
172 <option value="out_FLAG">out (Type of extrapolation to apply: two-point-linear: use the first and last data point to build a single linear model, four-point-linear: build two linear models on both ends using the first two / last two points, global-linear: use all points to build a single linear model)</option> 172 <option value="out_FLAG">out (Output files (same file type as 'in'))</option>
173 <option value="trafo_out_FLAG">trafo_out (Type of extrapolation to apply: two-point-linear: use the first and last data point to build a single linear model, four-point-linear: build two linear models on both ends using the first two / last two points, global-linear: use all points to build a single linear model)</option> 173 <option value="trafo_out_FLAG">trafo_out (Transformation output files)</option>
174 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 174 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
175 </param> 175 </param>
176 </inputs> 176 </inputs>
177 <outputs> 177 <outputs>
178 <collection type="list" name="out" label="${tool.name} on ${on_string}: out"> 178 <collection type="list" name="out" label="${tool.name} on ${on_string}: out">
195 <expand macro="manutest_MapAlignerIdentification"/> 195 <expand macro="manutest_MapAlignerIdentification"/>
196 </tests> 196 </tests>
197 <help><![CDATA[Corrects retention time distortions between maps based on common peptide identifications. 197 <help><![CDATA[Corrects retention time distortions between maps based on common peptide identifications.
198 198
199 199
200 For more information, visit http://www.openms.de/documentation/TOPP_MapAlignerIdentification.html]]></help> 200 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_MapAlignerIdentification.html]]></help>
201 <expand macro="references"/> 201 <expand macro="references"/>
202 </tool> 202 </tool>