Mercurial > repos > galaxyp > openms_mapaligneridentification
diff test-data/SequenceCoverageCalculator.idXML @ 2:1f0a9c3cb526 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
| author | galaxyp |
|---|---|
| date | Fri, 17 May 2019 05:04:47 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/SequenceCoverageCalculator.idXML Fri May 17 05:04:47 2019 -0400 @@ -0,0 +1,161 @@ +<?xml version="1.0" encoding="UTF-8"?> +<?xml-stylesheet type="text/xsl" href="https://www.openms.de/xml-stylesheet/IdXML.xsl" ?> +<IdXML version="1.5" xsi:noNamespaceSchemaLocation="https://www.openms.de/xml-schema/IdXML_1_5.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> + <SearchParameters id="SP_0" db="/home/eugen/Development/OpenMS/src/tests/topp/OpenPepXL_input.fasta" db_version="" taxonomy="" mass_type="monoisotopic" charges="3,4,5,6,7" enzyme="trypsin" missed_cleavages="2" precursor_peak_tolerance="10" precursor_peak_tolerance_ppm="true" peak_mass_tolerance="0.2" peak_mass_tolerance_ppm="false" > + <UserParam type="string" name="input_consensusXML" value="/home/eugen/Development/OpenMS/src/tests/topp/OpenPepXL_input.consensusXML"/> + <UserParam type="string" name="input_mzML" value="/home/eugen/Development/OpenMS/src/tests/topp/OpenPepXL_input.mzML"/> + <UserParam type="string" name="input_decoys" value=""/> + <UserParam type="int" name="decoy_prefix" value="0"/> + <UserParam type="string" name="decoy_string" value="decoy"/> + <UserParam type="string" name="out_xquest_specxml" value="OpenPepXL_output.spec.xml.tmp"/> + <UserParam type="int" name="precursor:min_charge" value="3"/> + <UserParam type="int" name="precursor:max_charge" value="7"/> + <UserParam type="float" name="fragment:mass_tolerance_xlinks" value="0.3"/> + <UserParam type="int" name="peptide:min_size" value="5"/> + <UserParam type="stringList" name="cross_link:residue1" value="[K]"/> + <UserParam type="stringList" name="cross_link:residue2" value="[K]"/> + <UserParam type="float" name="cross_link:mass" value="138.0680796"/> + <UserParam type="float" name="cross_link:mass_isoshift" value="12.075321"/> + <UserParam type="floatList" name="cross_link:mass_monolink" value="[156.07864431, 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value="MS:1002494"/> + </ProteinIdentification> + <PeptideIdentification score_type="OpenXQuest:combined score" higher_score_better="true" significance_threshold="0" MZ="728.411010742188" RT="2120.05249023438" spectrum_reference="spectrum=99,spectrum=48" > + <PeptideHit score="0.936605209529642" sequence="LAAPQLVQMFIGDGAK(Xlink:DSS)LVR" charge="3" aa_before="K" aa_after="D" start="249" end="267" protein_refs="PH_1" > + <UserParam type="string" name="fragment_annotation" value="1004.99096679688,0.334201395511627,2,"[alpha|xi$b18]""/> + <UserParam type="string" name="spectrum_reference" value="spectrum=99"/> + <UserParam type="string" name="target_decoy" value="target"/> + <UserParam type="int" name="spectrum_index" value="81"/> + <UserParam type="float" name="xl_mass" value="156.07864431"/> + <UserParam type="string" name="xl_chain" value="MS:1002509"/> + <UserParam type="int" name="xl_pos" value="15"/> + <UserParam type="string" name="xl_type" value="mono-link"/> + <UserParam 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