Mercurial > repos > galaxyp > openms_mapalignerspectrum
annotate tool.conf @ 2:3ba382706e89 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
| author | galaxyp |
|---|---|
| date | Fri, 17 May 2019 04:41:08 -0400 |
| parents | 788f648028e0 |
| children |
| rev | line source |
|---|---|
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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changeset
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1 <?xml version='1.0' encoding='UTF-8'?> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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2 <toolbox> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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3 <section id="section-id-Peptidepropertyprediction" name="Peptide property prediction"> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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4 <tool file="openms/PTModel.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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changeset
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5 <tool file="openms/PTPredict.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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6 <tool file="openms/RTModel.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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7 <tool file="openms/RTPredict.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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8 </section> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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9 <section id="section-id-TargetedExperiments" name="Targeted Experiments"> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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changeset
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10 <tool file="openms/InclusionExclusionListCreator.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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11 <tool file="openms/MRMMapper.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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12 <tool file="openms/OpenSwathAnalyzer.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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13 <tool file="openms/OpenSwathAssayGenerator.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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14 <tool file="openms/OpenSwathChromatogramExtractor.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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15 <tool file="openms/OpenSwathConfidenceScoring.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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16 <tool file="openms/OpenSwathDecoyGenerator.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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17 <tool file="openms/OpenSwathDIAPreScoring.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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18 <tool file="openms/OpenSwathFeatureXMLToTSV.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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19 <tool file="openms/OpenSwathFileSplitter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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20 <tool file="openms/OpenSwathMzMLFileCacher.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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21 <tool file="openms/OpenSwathRewriteToFeatureXML.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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22 <tool file="openms/OpenSwathRTNormalizer.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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23 <tool file="openms/PrecursorIonSelector.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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24 <tool file="openms/TargetedFileConverter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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25 </section> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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26 <section id="section-id-Utilities" name="Utilities"> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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27 <tool file="openms/AccurateMassSearch.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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28 <tool file="openms/CVInspector.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
parents:
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29 <tool file="openms/DatabaseFilter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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30 <tool file="openms/DecoyDatabase.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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31 <tool file="openms/DeMeanderize.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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32 <tool file="openms/Digestor.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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33 <tool file="openms/DigestorMotif.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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34 <tool file="openms/ERPairFinder.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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35 <tool file="openms/FFEval.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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36 <tool file="openms/FuzzyDiff.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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37 <tool file="openms/IDDecoyProbability.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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38 <tool file="openms/IDExtractor.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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39 <tool file="openms/IDMassAccuracy.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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40 <tool file="openms/IDScoreSwitcher.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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41 <tool file="openms/IDSplitter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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42 <tool file="openms/LabeledEval.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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43 <tool file="openms/LowMemPeakPickerHiRes.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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44 <tool file="openms/LowMemPeakPickerHiRes_RandomAccess.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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45 <tool file="openms/MassCalculator.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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46 <tool file="openms/MetaboliteSpectralMatcher.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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47 <tool file="openms/MetaProSIP.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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48 <tool file="openms/MRMPairFinder.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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49 <tool file="openms/MRMTransitionGroupPicker.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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50 <tool file="openms/MSSimulator.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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51 <tool file="openms/MultiplexResolver.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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52 <tool file="openms/MzMLSplitter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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53 <tool file="openms/OpenSwathWorkflow.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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54 <tool file="openms/QCCalculator.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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55 <tool file="openms/QCEmbedder.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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56 <tool file="openms/QCExporter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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57 <tool file="openms/QCExtractor.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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58 <tool file="openms/QCImporter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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59 <tool file="openms/QCMerger.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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60 <tool file="openms/QCShrinker.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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61 <tool file="openms/RNPxl.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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62 <tool file="openms/RNPxlSearch.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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63 <tool file="openms/RNPxlXICFilter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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64 <tool file="openms/RTEvaluation.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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65 <tool file="openms/SemanticValidator.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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66 <tool file="openms/SequenceCoverageCalculator.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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67 <tool file="openms/SimpleSearchEngine.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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68 <tool file="openms/SpecLibCreator.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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69 <tool file="openms/SpectraSTSearchAdapter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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70 <tool file="openms/SvmTheoreticalSpectrumGeneratorTrainer.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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71 <tool file="openms/TICCalculator.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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72 <tool file="openms/TopPerc.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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73 <tool file="openms/TransformationEvaluation.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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74 <tool file="openms/XMLValidator.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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75 </section> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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diff
changeset
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76 <section id="section-id-MapAlignment" name="Map Alignment"> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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77 <tool file="openms/ConsensusMapNormalizer.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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78 <tool file="openms/FeatureLinkerLabeled.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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79 <tool file="openms/FeatureLinkerUnlabeled.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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80 <tool file="openms/FeatureLinkerUnlabeledKD.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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81 <tool file="openms/FeatureLinkerUnlabeledQT.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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82 <tool file="openms/MapRTTransformer.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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83 </section> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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84 <section id="section-id-IDProcessing" name="ID Processing"> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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85 <tool file="openms/ConsensusID.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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86 <tool file="openms/FalseDiscoveryRate.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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87 <tool file="openms/FidoAdapter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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88 <tool file="openms/IDConflictResolver.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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89 <tool file="openms/IDFileConverter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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90 <tool file="openms/IDFilter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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91 <tool file="openms/IDMapper.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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92 <tool file="openms/IDPosteriorErrorProbability.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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93 <tool file="openms/IDRTCalibration.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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94 <tool file="openms/LuciphorAdapter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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95 <tool file="openms/PeptideIndexer.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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96 <tool file="openms/PhosphoScoring.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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97 </section> |
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788f648028e0
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98 <section id="section-id-Signalprocessingandpreprocessing" name="Signal processing and preprocessing"> |
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788f648028e0
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99 <tool file="openms/BaselineFilter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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100 <tool file="openms/ExternalCalibration.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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101 <tool file="openms/HighResPrecursorMassCorrector.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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102 <tool file="openms/InternalCalibration.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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103 <tool file="openms/MapNormalizer.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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104 <tool file="openms/MassTraceExtractor.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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105 <tool file="openms/NoiseFilterGaussian.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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106 <tool file="openms/NoiseFilterSGolay.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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107 <tool file="openms/PeakPickerHiRes.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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108 <tool file="openms/PeakPickerIterative.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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109 <tool file="openms/PeakPickerWavelet.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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110 <tool file="openms/PrecursorMassCorrector.xml"/> |
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788f648028e0
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111 <tool file="openms/SpectraMerger.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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112 <tool file="openms/TOFCalibration.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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113 </section> |
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788f648028e0
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114 <section id="section-id-Identification" name="Identification"> |
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788f648028e0
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115 <tool file="openms/CompNovoCID.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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116 <tool file="openms/CompNovo.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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117 <tool file="openms/InspectAdapter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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118 <tool file="openms/MascotAdapter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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119 <tool file="openms/MascotAdapterOnline.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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120 <tool file="openms/MSGFPlusAdapter.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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121 <tool file="openms/ProteinInference.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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122 <tool file="openms/SpectraFilterBernNorm.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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123 <tool file="openms/SpectraFilterMarkerMower.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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124 <tool file="openms/SpectraFilterNLargest.xml"/> |
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788f648028e0
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125 <tool file="openms/SpectraFilterNormalizer.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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126 <tool file="openms/SpectraFilterParentPeakMower.xml"/> |
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788f648028e0
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127 <tool file="openms/SpectraFilterScaler.xml"/> |
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788f648028e0
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128 <tool file="openms/SpectraFilterSqrtMower.xml"/> |
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129 <tool file="openms/SpectraFilterThresholdMower.xml"/> |
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788f648028e0
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130 <tool file="openms/SpectraFilterWindowMower.xml"/> |
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131 <tool file="openms/XTandemAdapter.xml"/> |
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132 </section> |
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133 <section id="section-id-FileHandling" name="File Handling"> |
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134 <tool file="openms/DTAExtractor.xml"/> |
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135 <tool file="openms/FileConverter.xml"/> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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136 <tool file="openms/FileFilter.xml"/> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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137 <tool file="openms/FileInfo.xml"/> |
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138 <tool file="openms/FileMerger.xml"/> |
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139 <tool file="openms/IDMerger.xml"/> |
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140 <tool file="openms/IDRipper.xml"/> |
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141 <tool file="openms/MapStatistics.xml"/> |
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142 <tool file="openms/MzTabExporter.xml"/> |
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143 <tool file="openms/TextExporter.xml"/> |
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144 </section> |
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145 <section id="section-id-Quantitation" name="Quantitation"> |
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146 <tool file="openms/AdditiveSeries.xml"/> |
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147 <tool file="openms/Decharger.xml"/> |
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148 <tool file="openms/EICExtractor.xml"/> |
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149 <tool file="openms/FeatureFinderCentroided.xml"/> |
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150 <tool file="openms/FeatureFinderIdentification.xml"/> |
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151 <tool file="openms/FeatureFinderIsotopeWavelet.xml"/> |
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152 <tool file="openms/FeatureFinderMetabo.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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153 <tool file="openms/FeatureFinderMRM.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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154 <tool file="openms/FeatureFinderMultiplex.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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155 <tool file="openms/FeatureFinderSuperHirn.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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156 <tool file="openms/IsobaricAnalyzer.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
galaxyp
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157 <tool file="openms/ProteinQuantifier.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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158 <tool file="openms/ProteinResolver.xml"/> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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159 </section> |
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788f648028e0
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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160 </toolbox> |