Mercurial > repos > galaxyp > openms_mapalignerspectrum

comparison MapAlignerSpectrum.xml @ 6:051ded4b9e1f draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:11:54 +0000
parents b5b03aacbfd9
children 085863ba8f0e
comparison
equal deleted inserted replaced
5:eb4c663659f7 6:051ded4b9e1f
148 <expand macro="list_string_san"/> 148 <expand macro="list_string_san"/>
149 </param> 149 </param>
150 </section> 150 </section>
151 </section> 151 </section>
152 <expand macro="adv_opts_macro"> 152 <expand macro="adv_opts_macro">
153 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 153 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
154 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 154 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
155 <expand macro="list_string_san"/> 155 <expand macro="list_string_san"/>
156 </param> 156 </param>
157 </expand> 157 </expand>
158 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="false"> 158 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
159 <option value="out_FLAG">out (Type of extrapolation to apply: two-point-linear: use the first and last data point to build a single linear model, four-point-linear: build two linear models on both ends using the first two / last two points, global-linear: use all points to build a single linear model)</option> 159 <option value="out_FLAG">out (Output files (same file type as 'in'))</option>
160 <option value="trafo_out_FLAG">trafo_out (Type of extrapolation to apply: two-point-linear: use the first and last data point to build a single linear model, four-point-linear: build two linear models on both ends using the first two / last two points, global-linear: use all points to build a single linear model)</option> 160 <option value="trafo_out_FLAG">trafo_out (Transformation output files)</option>
161 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 161 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
162 </param> 162 </param>
163 </inputs> 163 </inputs>
164 <outputs> 164 <outputs>
165 <collection type="list" name="out" label="${tool.name} on ${on_string}: out"> 165 <collection type="list" name="out" label="${tool.name} on ${on_string}: out">
182 <expand macro="manutest_MapAlignerSpectrum"/> 182 <expand macro="manutest_MapAlignerSpectrum"/>
183 </tests> 183 </tests>
184 <help><![CDATA[Corrects retention time distortions between maps by spectrum alignment. 184 <help><![CDATA[Corrects retention time distortions between maps by spectrum alignment.
185 185
186 186
187 For more information, visit http://www.openms.de/documentation/TOPP_MapAlignerSpectrum.html]]></help> 187 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_MapAlignerSpectrum.html]]></help>
188 <expand macro="references"/> 188 <expand macro="references"/>
189 </tool> 189 </tool>