Mercurial > repos > galaxyp > openms_mapalignerspectrum

diff MapAlignerSpectrum.xml @ 2:3ba382706e89 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:41:08 -0400
parents 788f648028e0
children b5b03aacbfd9
line wrap: on
line diff
--- a/MapAlignerSpectrum.xml	Tue Mar 20 15:05:24 2018 -0400
+++ b/MapAlignerSpectrum.xml	Fri May 17 04:41:08 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>MapAlignerSpectrum
+  <command detect_errors="aggressive"><![CDATA[MapAlignerSpectrum
 
 -in
   #for token in $param_in:
@@ -138,7 +138,7 @@
   -algorithm:mismatchscore $adv_opts.param_algorithm_mismatchscore
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input files to align (all must have the same file type)" help="(-in) ">
       <sanitizer>
@@ -208,5 +208,5 @@
   <help>Corrects retention time distortions between maps by spectrum alignment.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MapAlignerSpectrum.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_MapAlignerSpectrum.html</help>
 </tool>