Mercurial > repos > galaxyp > openms_mapnormalizer

comparison MapNormalizer.xml @ 11:7d45a120519f draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:30:58 +0000
parents cd9af291f6d4
children 35acd0d34d48
comparison
equal deleted inserted replaced
10:fcbe0103feed 11:7d45a120519f
41 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile> 41 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile>
42 </configfiles> 42 </configfiles>
43 <inputs> 43 <inputs>
44 <param name="in" argument="-in" type="data" format="mzml" optional="false" label="input file" help=" select mzml data sets(s)"/> 44 <param name="in" argument="-in" type="data" format="mzml" optional="false" label="input file" help=" select mzml data sets(s)"/>
45 <expand macro="adv_opts_macro"> 45 <expand macro="adv_opts_macro">
46 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 46 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
47 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 47 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
48 <expand macro="list_string_san"/> 48 <expand macro="list_string_san"/>
49 </param> 49 </param>
50 </expand> 50 </expand>
51 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 51 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
52 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 52 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
53 </param> 53 </param>
54 </inputs> 54 </inputs>
55 <outputs> 55 <outputs>
56 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> 56 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>
63 <expand macro="manutest_MapNormalizer"/> 63 <expand macro="manutest_MapNormalizer"/>
64 </tests> 64 </tests>
65 <help><![CDATA[Normalizes peak intensities in an MS run. 65 <help><![CDATA[Normalizes peak intensities in an MS run.
66 66
67 67
68 For more information, visit http://www.openms.de/documentation/TOPP_MapNormalizer.html]]></help> 68 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_MapNormalizer.html]]></help>
69 <expand macro="references"/> 69 <expand macro="references"/>
70 </tool> 70 </tool>