Mercurial > repos > galaxyp > openms_mapstatistics

comparison MapStatistics.xml @ 7:d44dc4282101 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:14:02 -0400
parents fe5d511d1195
children 05215884f6d0
comparison
equal deleted inserted replaced
6:ce167f132711 7:d44dc4282101
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>MapStatistics 13 <command detect_errors="aggressive"><![CDATA[MapStatistics
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
33 #if $adv_opts.adv_opts_selector=='advanced': 33 #if $adv_opts.adv_opts_selector=='advanced':
34 #if $adv_opts.param_force: 34 #if $adv_opts.param_force:
35 -force 35 -force
36 #end if 36 #end if
37 #end if 37 #end if
38 </command> 38 ]]></command>
39 <inputs> 39 <inputs>
40 <param name="param_in" type="data" format="featurexml,consensusxml" optional="False" label="Input file" help="(-in) "/> 40 <param name="param_in" type="data" format="featurexml,consensusxml" optional="False" label="Input file" help="(-in) "/>
41 <param name="param_n" type="integer" min="1" max="100" optional="True" value="4" label="Report separate statistics for each of n RT slices of the map" help="(-n) "/> 41 <param name="param_n" type="integer" min="1" max="100" optional="True" value="4" label="Report separate statistics for each of n RT slices of the map" help="(-n) "/>
42 <param name="param_m" display="radio" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/> 42 <param name="param_m" display="radio" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/>
43 <param name="param_p" display="radio" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/> 43 <param name="param_p" display="radio" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/>
50 <data name="param_out" format="txt"/> 50 <data name="param_out" format="txt"/>
51 </outputs> 51 </outputs>
52 <help>Extract extended statistics on the features of a map for quality control. 52 <help>Extract extended statistics on the features of a map for quality control.
53 53
54 54
55 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MapStatistics.html</help> 55 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_MapStatistics.html</help>
56 </tool> 56 </tool>