Mercurial > repos > galaxyp > openms_mapstatistics
comparison MapStatistics.xml @ 0:e4c1d9a768db draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
| author | galaxyp |
|---|---|
| date | Wed, 01 Mar 2017 12:37:14 -0500 |
| parents | |
| children | 67c01c07bbc1 |
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| -1:000000000000 | 0:e4c1d9a768db |
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| 1 <?xml version='1.0' encoding='UTF-8'?> | |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | |
| 3 <!--Proposed Tool Section: [File Handling]--> | |
| 4 <tool id="MapStatistics" name="MapStatistics" version="2.1.0"> | |
| 5 <description>Extract extended statistics on the features of a map for quality control.</description> | |
| 6 <macros> | |
| 7 <token name="@EXECUTABLE@">MapStatistics</token> | |
| 8 <import>macros.xml</import> | |
| 9 </macros> | |
| 10 <expand macro="references"/> | |
| 11 <expand macro="stdio"/> | |
| 12 <expand macro="requirements"/> | |
| 13 <command>MapStatistics | |
| 14 | |
| 15 #if $param_in: | |
| 16 -in $param_in | |
| 17 #end if | |
| 18 #if $param_out: | |
| 19 -out $param_out | |
| 20 #end if | |
| 21 #if $param_n: | |
| 22 -n $param_n | |
| 23 #end if | |
| 24 #if $param_m: | |
| 25 -m | |
| 26 #end if | |
| 27 #if $param_p: | |
| 28 -p | |
| 29 #end if | |
| 30 #if $param_s: | |
| 31 -s | |
| 32 #end if | |
| 33 #if $adv_opts.adv_opts_selector=='advanced': | |
| 34 #if $adv_opts.param_force: | |
| 35 -force | |
| 36 #end if | |
| 37 #end if | |
| 38 </command> | |
| 39 <inputs> | |
| 40 <param name="param_in" type="data" format="featurexml,consensusxml" optional="False" label="Input file" help="(-in) "/> | |
| 41 <param name="param_n" type="integer" min="1" max="100" optional="True" value="4" label="Report separate statistics for each of n RT slices of the map" help="(-n) "/> | |
| 42 <param name="param_m" display="radio" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/> | |
| 43 <param name="param_p" display="radio" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/> | |
| 44 <param name="param_s" display="radio" type="boolean" truevalue="-s" falsevalue="" checked="false" optional="True" label="Computes a summary statistics of intensities, qualities, and widths" help="(-s) "/> | |
| 45 <expand macro="advanced_options"> | |
| 46 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> | |
| 47 </expand> | |
| 48 </inputs> | |
| 49 <outputs> | |
| 50 <data name="param_out" format="txt"/> | |
| 51 </outputs> | |
| 52 <help>Extract extended statistics on the features of a map for quality control. | |
| 53 | |
| 54 | |
| 55 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MapStatistics.html</help> | |
| 56 </tool> |