Mercurial > repos > galaxyp > openms_mascotadapter
comparison MascotAdapter.xml @ 5:b0fcab295c60 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
| author | galaxyp |
|---|---|
| date | Mon, 12 Feb 2018 12:55:06 -0500 |
| parents | 36da1e3613ea |
| children | fd960d61b64d |
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| 4:2d60de41a5a0 | 5:b0fcab295c60 |
|---|---|
| 1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> |
| 3 <!--Proposed Tool Section: [Identification]--> | 3 <!--Proposed Tool Section: [Identification]--> |
| 4 <tool id="MascotAdapter" name="MascotAdapter" version="2.2.0.1"> | 4 <tool id="MascotAdapter" name="MascotAdapter" version="2.3.0"> |
| 5 <description>Annotates MS/MS spectra using Mascot.</description> | 5 <description>Annotates MS/MS spectra using Mascot.</description> |
| 6 <macros> | 6 <macros> |
| 7 <token name="@EXECUTABLE@">MascotAdapter</token> | 7 <token name="@EXECUTABLE@">MascotAdapter</token> |
| 8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
| 9 </macros> | 9 </macros> |
| 220 <option value=". . . . Other viruses">. . . . Other viruses</option> | 220 <option value=". . . . Other viruses">. . . . Other viruses</option> |
| 221 <option value=". . Other (includes plasmids and artificial sequences)">. . Other (includes plasmids and artificial sequences)</option> | 221 <option value=". . Other (includes plasmids and artificial sequences)">. . Other (includes plasmids and artificial sequences)</option> |
| 222 <option value=". . unclassified">. . unclassified</option> | 222 <option value=". . unclassified">. . unclassified</option> |
| 223 <option value=". . Species information unavailable">. . Species information unavailable</option> | 223 <option value=". . Species information unavailable">. . Species information unavailable</option> |
| 224 </param> | 224 </param> |
| 225 <repeat name="rep_param_modifications" min="0" max="1" title="param_modifications"> | 225 <repeat name="rep_param_modifications" min="0" title="param_modifications"> |
| 226 <param name="param_modifications" type="text" size="30" label="the modifications i.e. Carboxymethyl (C)" help="(-modifications) "> | 226 <param name="param_modifications" type="text" size="30" label="the modifications i.e. Carboxymethyl (C)" help="(-modifications) "> |
| 227 <sanitizer> | 227 <sanitizer> |
| 228 <valid initial="string.printable"> | 228 <valid initial="string.printable"> |
| 229 <remove value="'"/> | 229 <remove value="'"/> |
| 230 <remove value="""/> | 230 <remove value="""/> |
| 231 </valid> | 231 </valid> |
| 232 </sanitizer> | 232 </sanitizer> |
| 233 </param> | 233 </param> |
| 234 </repeat> | 234 </repeat> |
| 235 <repeat name="rep_param_variable_modifications" min="0" max="1" title="param_variable_modifications"> | 235 <repeat name="rep_param_variable_modifications" min="0" title="param_variable_modifications"> |
| 236 <param name="param_variable_modifications" type="text" size="30" label="the variable modifications i.e. Carboxymethyl (C)" help="(-variable_modifications) "> | 236 <param name="param_variable_modifications" type="text" size="30" label="the variable modifications i.e. Carboxymethyl (C)" help="(-variable_modifications) "> |
| 237 <sanitizer> | 237 <sanitizer> |
| 238 <valid initial="string.printable"> | 238 <valid initial="string.printable"> |
| 239 <remove value="'"/> | 239 <remove value="'"/> |
| 240 <remove value="""/> | 240 <remove value="""/> |