Mercurial > repos > galaxyp > openms_mascotadapteronline

comparison MascotAdapterOnline.xml @ 7:fff87265e9b0 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:31:52 -0400
parents cd20b37947f9
children a90f253da067
comparison
equal deleted inserted replaced
6:d4dbddff2dd6 7:fff87265e9b0
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>MascotAdapterOnline 13 <command detect_errors="aggressive"><![CDATA[MascotAdapterOnline
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
168 #end if 168 #end if
169 #if $adv_opts.param_Mascot_server_skip_export: 169 #if $adv_opts.param_Mascot_server_skip_export:
170 -Mascot_server:skip_export 170 -Mascot_server:skip_export
171 #end if 171 #end if
172 #end if 172 #end if
173 </command> 173 ]]></command>
174 <inputs> 174 <inputs>
175 <param name="param_in" type="data" format="mzml" optional="False" label="input file in mzML format." help="(-in) "/> 175 <param name="param_in" type="data" format="mzml" optional="False" label="input file in mzML format." help="(-in) "/>
176 <param name="param_Mascot_parameters_database" type="text" size="30" value="MSDB" label="Name of the sequence database" help="(-database) "> 176 <param name="param_Mascot_parameters_database" type="text" size="30" value="MSDB" label="Name of the sequence database" help="(-database) ">
177 <sanitizer> 177 <sanitizer>
178 <valid initial="string.printable"> 178 <valid initial="string.printable">
5423 <data name="param_out" format="idxml"/> 5423 <data name="param_out" format="idxml"/>
5424 </outputs> 5424 </outputs>
5425 <help>Annotates MS/MS spectra using Mascot. 5425 <help>Annotates MS/MS spectra using Mascot.
5426 5426
5427 5427
5428 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MascotAdapterOnline.html</help> 5428 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_MascotAdapterOnline.html</help>
5429 </tool> 5429 </tool>