Mercurial > repos > galaxyp > openms_masscalculator

comparison MassCalculator.xml @ 7:b3d5b4861942 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:13:00 -0400
parents 7db481946a90
children ff18cb79cdd2
comparison
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6:268254ac7f5f 7:b3d5b4861942
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>MassCalculator 13 <command detect_errors="aggressive"><![CDATA[MassCalculator
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 18
65 #if $adv_opts.adv_opts_selector=='advanced': 65 #if $adv_opts.adv_opts_selector=='advanced':
66 #if $adv_opts.param_force: 66 #if $adv_opts.param_force:
67 -force 67 -force
68 #end if 68 #end if
69 #end if 69 #end if
70 </command> 70 ]]></command>
71 <inputs> 71 <inputs>
72 <param name="param_in" type="data" format="txt" optional="True" label="Input file with peptide sequences and optionally charge numbers (mutually exclusive to 'in_seq')" help="(-in) "/> 72 <param name="param_in" type="data" format="txt" optional="True" label="Input file with peptide sequences and optionally charge numbers (mutually exclusive to 'in_seq')" help="(-in) "/>
73 <repeat name="rep_param_in_seq" min="0" title="param_in_seq"> 73 <repeat name="rep_param_in_seq" min="0" title="param_in_seq">
74 <param name="param_in_seq" type="text" size="30" label="List of peptide sequences (mutually exclusive to 'in')" help="(-in_seq) "> 74 <param name="param_in_seq" type="text" size="30" label="List of peptide sequences (mutually exclusive to 'in')" help="(-in_seq) ">
75 <sanitizer> 75 <sanitizer>
125 <data name="param_out" format="txt"/> 125 <data name="param_out" format="txt"/>
126 </outputs> 126 </outputs>
127 <help>Calculates masses and mass-to-charge ratios of peptide sequences 127 <help>Calculates masses and mass-to-charge ratios of peptide sequences
128 128
129 129
130 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_MassCalculator.html</help> 130 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_MassCalculator.html</help>
131 </tool> 131 </tool>