Mercurial > repos > galaxyp > openms_masstraceextractor

comparison MassTraceExtractor.xml @ 11:d7e537b28220 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:59:54 +0000
parents 5d7b3d2b66a8
children 29d893e855c6
comparison
equal deleted inserted replaced
10:4e32bb5991e3 11:d7e537b28220
77 <option value="off">off</option> 77 <option value="off">off</option>
78 <option value="fixed" selected="true">fixed</option> 78 <option value="fixed" selected="true">fixed</option>
79 <option value="auto">auto</option> 79 <option value="auto">auto</option>
80 <expand macro="list_string_san"/> 80 <expand macro="list_string_san"/>
81 </param> 81 </param>
82 <param name="min_fwhm" argument="-algorithm:epd:min_fwhm" type="float" optional="true" value="3.0" label="Minimum full-width-at-half-maximum of chromatographic peaks (in seconds)" help="Ignored if parameter width_filtering is off or auto"/> 82 <param name="min_fwhm" argument="-algorithm:epd:min_fwhm" type="float" optional="true" value="1.0" label="Minimum full-width-at-half-maximum of chromatographic peaks (in seconds)" help="Ignored if parameter width_filtering is off or auto"/>
83 <param name="max_fwhm" argument="-algorithm:epd:max_fwhm" type="float" optional="true" value="60.0" label="Maximum full-width-at-half-maximum of chromatographic peaks (in seconds)" help="Ignored if parameter width_filtering is off or auto"/> 83 <param name="max_fwhm" argument="-algorithm:epd:max_fwhm" type="float" optional="true" value="60.0" label="Maximum full-width-at-half-maximum of chromatographic peaks (in seconds)" help="Ignored if parameter width_filtering is off or auto"/>
84 <param name="masstrace_snr_filtering" argument="-algorithm:epd:masstrace_snr_filtering" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Apply post-filtering by signal-to-noise ratio after smoothing" help=""/> 84 <param name="masstrace_snr_filtering" argument="-algorithm:epd:masstrace_snr_filtering" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Apply post-filtering by signal-to-noise ratio after smoothing" help=""/>
85 <param name="enabled" argument="-algorithm:epd:enabled" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Enables/disables the chromatographic peak detection of mass traces" help=""/> 85 <param name="enabled" argument="-algorithm:epd:enabled" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Enables/disables the chromatographic peak detection of mass traces" help=""/>
86 </section> 86 </section>
87 </section> 87 </section>
88 <expand macro="adv_opts_macro"> 88 <expand macro="adv_opts_macro">
89 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 89 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
90 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 90 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
91 <expand macro="list_string_san"/> 91 <expand macro="list_string_san"/>
92 </param> 92 </param>
93 </expand> 93 </expand>
94 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 94 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
95 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 95 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
96 </param> 96 </param>
97 </inputs> 97 </inputs>
98 <outputs> 98 <outputs>
99 <data name="out" label="${tool.name} on ${on_string}: out"> 99 <data name="out" label="${tool.name} on ${on_string}: out">
111 <expand macro="manutest_MassTraceExtractor"/> 111 <expand macro="manutest_MassTraceExtractor"/>
112 </tests> 112 </tests>
113 <help><![CDATA[Detects mass traces in centroided LC-MS data. 113 <help><![CDATA[Detects mass traces in centroided LC-MS data.
114 114
115 115
116 For more information, visit http://www.openms.de/documentation/TOPP_MassTraceExtractor.html]]></help> 116 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_MassTraceExtractor.html]]></help>
117 <expand macro="references"/> 117 <expand macro="references"/>
118 </tool> 118 </tool>