Mercurial > repos > galaxyp > openms_metaboliteadductdecharger

comparison MetaboliteAdductDecharger.xml @ 2:d37e3dc967b9 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 07:55:44 -0400
parents ca7fce38ea1f
children 68e3317532cb
comparison
equal deleted inserted replaced
1:3867204d3ce4 2:d37e3dc967b9
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>MetaboliteAdductDecharger 13 <command detect_errors="aggressive"><![CDATA[MetaboliteAdductDecharger
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out_cm: 18 #if $param_out_cm:
85 #end if 85 #end if
86 #if $adv_opts.param_algorithm_MetaboliteFeatureDeconvolution_verbose_level: 86 #if $adv_opts.param_algorithm_MetaboliteFeatureDeconvolution_verbose_level:
87 -algorithm:MetaboliteFeatureDeconvolution:verbose_level $adv_opts.param_algorithm_MetaboliteFeatureDeconvolution_verbose_level 87 -algorithm:MetaboliteFeatureDeconvolution:verbose_level $adv_opts.param_algorithm_MetaboliteFeatureDeconvolution_verbose_level
88 #end if 88 #end if
89 #end if 89 #end if
90 </command> 90 ]]></command>
91 <inputs> 91 <inputs>
92 <param name="param_in" type="data" format="featurexml" optional="False" label="input file" help="(-in) "/> 92 <param name="param_in" type="data" format="featurexml" optional="False" label="input file" help="(-in) "/>
93 <param name="param_algorithm_MetaboliteFeatureDeconvolution_charge_min" type="integer" value="1" label="Minimal possible charge" help="(-charge_min) "/> 93 <param name="param_algorithm_MetaboliteFeatureDeconvolution_charge_min" type="integer" value="1" label="Minimal possible charge" help="(-charge_min) "/>
94 <param name="param_algorithm_MetaboliteFeatureDeconvolution_charge_max" type="integer" value="3" label="Maximal possible charge" help="(-charge_max) "/> 94 <param name="param_algorithm_MetaboliteFeatureDeconvolution_charge_max" type="integer" value="3" label="Maximal possible charge" help="(-charge_max) "/>
95 <param name="param_algorithm_MetaboliteFeatureDeconvolution_charge_span_max" type="integer" min="1" optional="True" value="3" label="Maximal range of charges for a single analyte, i.e" help="(-charge_span_max) observing q1=[5,6,7] implies span=3. Setting this to 1 will only find adduct variants of the same charge"/> 95 <param name="param_algorithm_MetaboliteFeatureDeconvolution_charge_span_max" type="integer" min="1" optional="True" value="3" label="Maximal range of charges for a single analyte, i.e" help="(-charge_span_max) observing q1=[5,6,7] implies span=3. Setting this to 1 will only find adduct variants of the same charge"/>
142 <data name="param_outpairs" format="consensusxml"/> 142 <data name="param_outpairs" format="consensusxml"/>
143 </outputs> 143 </outputs>
144 <help>Decharges and merges different feature charge variants of the same metabolite. 144 <help>Decharges and merges different feature charge variants of the same metabolite.
145 145
146 146
147 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_MetaboliteAdductDecharger.html</help> 147 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_MetaboliteAdductDecharger.html</help>
148 </tool> 148 </tool>