Mercurial > repos > galaxyp > openms_metaprosip

diff tools_blacklist.txt @ 9:73c1493ac4c2 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
author galaxyp
date Thu, 03 Sep 2020 16:22:06 +0000
parents fdb3fbfef4cc
children c18e6eb07aa9
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--- a/tools_blacklist.txt	Fri May 17 09:25:37 2019 -0400
+++ b/tools_blacklist.txt	Thu Sep 03 16:22:06 2020 +0000
@@ -1,9 +1,24 @@
-OMSSAAdapter
-MyriMatchAdapter
-PepNovoAdapter
-SeedListGenerator
-SpecLibSearcher
-MapAlignerIdentification
-MapAlignerPoseClustering
-MapAlignerSpectrum
-MapAlignerRTTransformer
+# seems not possible for 2.5 https://github.com/OpenMS/OpenMS/issues/4426
+DigestorMotif
+
+# deprecated https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/UTILS_IDDecoyProbability.html
+# https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/a16242.html
+IDDecoyProbability
+
+# personal communication with author V. Bafna: 
+# "InsPect is no longer maintained as there are many better tools including MS-GF+"
+InspectAdapter
+
+# licence? see https://github.com/bioconda/bioconda-recipes/issues/18953
+#MSFraggerAdapter
+
+# seems currently unusable https://github.com/OpenMS/OpenMS/pull/4443
+OpenSwathDIAPreScoring
+
+# https://github.com/OpenMS/OpenMS/issues/4550#issuecomment-594065727
+ProteomicsLFQ
+
+# https://github.com/OpenMS/OpenMS/issues/4401
+InclusionExclusionListCreator
+RTPredict
+PTPredict