Mercurial > repos > galaxyp > openms_mrmmapper

comparison MRMMapper.xml @ 11:bc8e70bada0e draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:06:08 +0000
parents 9a62bfe7661d
children 9a6f6a0ed604
comparison
equal deleted inserted replaced
10:ecd19f3312fe 11:bc8e70bada0e
52 <param name="product_tolerance" argument="-algorithm:product_tolerance" type="float" optional="true" value="0.1" label="Product tolerance when mapping (in Th)" help=""/> 52 <param name="product_tolerance" argument="-algorithm:product_tolerance" type="float" optional="true" value="0.1" label="Product tolerance when mapping (in Th)" help=""/>
53 <param name="map_multiple_assays" argument="-algorithm:map_multiple_assays" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Allow to map multiple assays to chromatograms and duplicate these chromatograms in the output" help=""/> 53 <param name="map_multiple_assays" argument="-algorithm:map_multiple_assays" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Allow to map multiple assays to chromatograms and duplicate these chromatograms in the output" help=""/>
54 <param name="error_on_unmapped" argument="-algorithm:error_on_unmapped" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Treat remaining, unmapped chromatograms as an erro" help=""/> 54 <param name="error_on_unmapped" argument="-algorithm:error_on_unmapped" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Treat remaining, unmapped chromatograms as an erro" help=""/>
55 </section> 55 </section>
56 <expand macro="adv_opts_macro"> 56 <expand macro="adv_opts_macro">
57 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 57 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
58 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 58 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
59 <expand macro="list_string_san"/> 59 <expand macro="list_string_san"/>
60 </param> 60 </param>
61 </expand> 61 </expand>
62 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 62 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
63 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 63 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
64 </param> 64 </param>
65 </inputs> 65 </inputs>
66 <outputs> 66 <outputs>
67 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> 67 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>
74 <expand macro="manutest_MRMMapper"/> 74 <expand macro="manutest_MRMMapper"/>
75 </tests> 75 </tests>
76 <help><![CDATA[MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML) 76 <help><![CDATA[MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML)
77 77
78 78
79 For more information, visit http://www.openms.de/documentation/TOPP_MRMMapper.html]]></help> 79 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_MRMMapper.html]]></help>
80 <expand macro="references"/> 80 <expand macro="references"/>
81 </tool> 81 </tool>