Mercurial > repos > galaxyp > openms_msfraggeradapter

comparison 404-urls.patch @ 2:6bcc338b9dc6 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:09:43 +0000
parents 5a9c3e827da5
children
comparison
equal deleted inserted replaced
1:5a9c3e827da5 2:6bcc338b9dc6
1 diff -ruN ClusterMassTracesByPrecursor.xml ClusterMassTracesByPrecursor.xml 1 diff -ruN FeatureFinderSuperHirn.xml FeatureFinderSuperHirn.xml
2 --- ClusterMassTracesByPrecursor.xml 2020-09-21 17:02:36.060104555 +0200 2 --- FeatureFinderSuperHirn.xml 2020-10-02 12:06:56.398572301 +0200
3 +++ ClusterMassTracesByPrecursor.xml 2020-09-21 17:00:02.864815223 +0200 3 +++ FeatureFinderSuperHirn.xml 2020-10-02 12:07:31.511153834 +0200
4 @@ -75,8 +75,6 @@ 4 @@ -105,6 +105,6 @@
5 <expand macro="manutest_ClusterMassTracesByPrecursor"/> 5 <help><![CDATA[Finds mass spectrometric features in mass spectra.
6 </tests> 6
7 <help><![CDATA[Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile. 7
8 - 8 -For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_FeatureFinderSuperHirn.html]]></help>
9 - 9 +For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.6.0/html/UTILS_FeatureFinderSuperHirn.html]]></help>
10 -For more information, visit http://www.openms.de/documentation/UTILS_ClusterMassTracesByPrecursor.html]]></help>
11 +]]></help>
12 <expand macro="references"/> 10 <expand macro="references"/>
13 </tool> 11 </tool>
14 diff -ruN ClusterMassTraces.xml ClusterMassTraces.xml
15 --- ClusterMassTraces.xml 2020-09-21 17:02:36.060104555 +0200
16 +++ ClusterMassTraces.xml 2020-09-21 17:00:22.192722036 +0200
17 @@ -69,8 +69,6 @@
18 <expand macro="manutest_ClusterMassTraces"/>
19 </tests>
20 <help><![CDATA[Creates pseudo spectra.
21 -
22 -
23 -For more information, visit http://www.openms.de/documentation/UTILS_ClusterMassTraces.html]]></help>
24 +]]></help>
25 <expand macro="references"/>
26 </tool>
27 diff -ruN FeatureFinderSuperHirn.xml FeatureFinderSuperHirn.xml
28 --- FeatureFinderSuperHirn.xml 2020-09-21 17:02:36.060104555 +0200
29 +++ FeatureFinderSuperHirn.xml 2020-09-21 17:00:42.372625907 +0200
30 @@ -103,8 +103,6 @@
31 <expand macro="manutest_FeatureFinderSuperHirn"/>
32 </tests>
33 <help><![CDATA[Finds mass spectrometric features in mass spectra.
34 -
35 -
36 -For more information, visit http://www.openms.de/documentation/TOPP_FeatureFinderSuperHirn.html]]></help>
37 +]]></help>
38 <expand macro="references"/>
39 </tool>
40 diff -ruN MSFraggerAdapter.xml MSFraggerAdapter.xml
41 --- MSFraggerAdapter.xml 2020-09-21 17:02:36.060104555 +0200
42 +++ MSFraggerAdapter.xml 2020-09-21 17:01:04.892519985 +0200
43 @@ -250,8 +250,6 @@
44 <expand macro="manutest_MSFraggerAdapter"/>
45 </tests>
46 <help><![CDATA[Peptide Identification with MSFragger
47 -
48 -
49 -For more information, visit http://www.openms.de/documentation/UTILS_MSFraggerAdapter.html]]></help>
50 +]]></help>
51 <expand macro="references"/>
52 </tool>
53 diff -ruN SimpleSearchEngine.xml SimpleSearchEngine.xml
54 --- SimpleSearchEngine.xml 2020-09-21 17:02:36.060104555 +0200
55 +++ SimpleSearchEngine.xml 2020-09-21 17:01:33.020389600 +0200
56 @@ -5373,8 +5373,6 @@
57 <expand macro="manutest_SimpleSearchEngine"/>
58 </tests>
59 <help><![CDATA[Annotates MS/MS spectra using SimpleSearchEngine.
60 -
61 -
62 -For more information, visit http://www.openms.de/documentation/UTILS_SimpleSearchEngine.html]]></help>
63 +]]></help>
64 <expand macro="references"/>
65 </tool>