Mercurial > repos > galaxyp > openms_msfraggeradapter
comparison readme.md @ 5:9866e1170611 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
author | galaxyp |
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date | Thu, 01 Dec 2022 19:05:24 +0000 |
parents | e133b5c8878f |
children | 907fda39b333 |
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4:e133b5c8878f | 5:9866e1170611 |
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72 | 72 |
73 The tools work by: | 73 The tools work by: |
74 | 74 |
75 Preprocessing: | 75 Preprocessing: |
76 | 76 |
77 - For each input / output data set parameter a directory is crated (named by | |
78 the parameter) | |
79 - For input data set parameters the links to the actual location of the data | 77 - For input data set parameters the links to the actual location of the data |
80 sets are created | 78 sets are created, the link names are `element_identifier`.`EXT`, where `EXT` |
79 is an extension that is known by OpenMS | |
80 - In order to avoid name collisions for the created links each is placed in a | |
81 unique directory: `PARAM_NAME/DATASET_ID`, where `PARAM_NAME` is the name | |
82 of the parameter and `DATASET_ID` is the id of the Galaxy dataset | |
83 - the same happens for output parameters that are in 1:1 correspondence with | |
84 an input parameter | |
85 | |
81 | 86 |
82 Main: | 87 Main: |
83 | 88 |
84 - The galaxy wrapper create two json config files: one containing the | 89 - The galaxy wrapper create two json config files: one containing the |
85 parameters and the values chosen by the user and the other the values of | 90 parameters and the values chosen by the user and the other the values of |