Mercurial > repos > galaxyp > openms_msfraggeradapter

comparison macros_test.xml @ 4:e133b5c8878f draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms"
author galaxyp
date Mon, 14 Dec 2020 16:55:52 +0000
parents 6bcc338b9dc6
children
comparison
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3:3fe401ded316 4:e133b5c8878f
333 <param name="in" ftype="mzml" value="spectra.mzML"/> 333 <param name="in" ftype="mzml" value="spectra.mzML"/>
334 <param name="id" ftype="idxml" value="MSGFPlusAdapter_1_out1.tmp"/> 334 <param name="id" ftype="idxml" value="MSGFPlusAdapter_1_out1.tmp"/>
335 <output name="out" ftype="idxml" value="PhosphoScoring.idxml" compare="sim_size" delta="5700"/> 335 <output name="out" ftype="idxml" value="PhosphoScoring.idxml" compare="sim_size" delta="5700"/>
336 </test> 336 </test>
337 </xml> 337 </xml>
338 <!-- TODO PSMFeatureExtractor should have auto tests with 2.7 https://github.com/OpenMS/OpenMS/pull/5087 -->
338 <xml name="manutest_PSMFeatureExtractor"> 339 <xml name="manutest_PSMFeatureExtractor">
339 <test expect_num_outputs="1"><!-- using the idXML outputs of two SearchAdapters that should be compatible --> 340 <test expect_num_outputs="1"><!-- using the idXML outputs of two SearchAdapters that should be compatible -->
340 <param name="adv_opts_cond|test" value="true"/> 341 <param name="adv_opts_cond|test" value="true"/>
341 <param name="in" ftype="idxml" value="MSGFPlusAdapter_1_out.idXML,XTandemAdapter_1_out.idXML"/> 342 <param name="in" ftype="idxml" value="MSGFPlusAdapter_1_out.idXML,XTandemAdapter_1_out.idXML"/>
342 <param name="multiple_search_engines" value="true"/> 343 <param name="multiple_search_engines" value="true"/>
352 <param name="adv_opts_cond|adv_opts_selector" value="advanced"/> 353 <param name="adv_opts_cond|adv_opts_selector" value="advanced"/>
353 <param name="adv_opts_cond|skip_db_check" value="true"/> 354 <param name="adv_opts_cond|skip_db_check" value="true"/>
354 <param name="out_type" value="mzid"/> 355 <param name="out_type" value="mzid"/>
355 <output name="out" ftype="mzid" value="PSMFeatureExtractor.mzid" compare="sim_size" delta="500"/> 356 <output name="out" ftype="mzid" value="PSMFeatureExtractor.mzid" compare="sim_size" delta="500"/>
356 </test> 357 </test>
358 <test expect_num_outputs="1"><!-- using the idXML outputs of two SearchAdapters that should be compatible -->
359 <param name="adv_opts_cond|test" value="true"/>
360 <param name="in" ftype="idxml" value="MSGFPlusAdapter_1_out.idXML"/>
361 <param name="adv_opts_cond|adv_opts_selector" value="advanced"/>
362 <param name="out_type" value="idxml"/>
363 <output name="out" ftype="idxml" value="PSMFeatureExtractor_3.idXML" compare="sim_size" delta="500"/>
364 </test>
357 </xml> 365 </xml>
358 <xml name="manutest_QCCalculator"> 366 <xml name="manutest_QCCalculator">
359 <test expect_num_outputs="1"><!-- took test data from another test w mzML input --> 367 <test expect_num_outputs="1"><!-- took test data from another test w mzML input -->
360 <param name="adv_opts_selector" value="advanced"/> 368 <param name="adv_opts_selector" value="advanced"/>
361 <param name="adv_opts_cond|test" value="true"/> 369 <param name="adv_opts_cond|test" value="true"/>