Mercurial > repos > galaxyp > openms_msgfplusadapter
comparison MSGFPlusAdapter.xml @ 8:1ed1f9f53857 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Fri, 17 May 2019 04:43:32 -0400 |
parents | f0761deada39 |
children | ea151aa30613 |
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7:f0761deada39 | 8:1ed1f9f53857 |
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8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command><![CDATA[ | 13 <command detect_errors="aggressive"><![CDATA[ |
14 | 14 |
15 ## check input file type | 15 ## check input file type |
16 #set $in_type = $param_in.ext | 16 #set $in_type = $param_in.ext |
17 | 17 |
18 ## create the symlinks to set the proper file extension, since msgf uses them to choose how to handle the input files | 18 ## create the symlinks to set the proper file extension, since msgf uses them to choose how to handle the input files |
5282 <data name="param_mzid_out" format="mzid" label=" ${tool.name} on ${on_string}: mzid"/> | 5282 <data name="param_mzid_out" format="mzid" label=" ${tool.name} on ${on_string}: mzid"/> |
5283 </outputs> | 5283 </outputs> |
5284 <help>MS/MS database search using MS-GF+. | 5284 <help>MS/MS database search using MS-GF+. |
5285 | 5285 |
5286 | 5286 |
5287 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MSGFPlusAdapter.html</help> | 5287 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_MSGFPlusAdapter.html</help> |
5288 </tool> | 5288 </tool> |