Mercurial > repos > galaxyp > openms_mssimulator
diff MSSimulator.xml @ 5:66f0ddeb23f3 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
author | galaxyp |
---|---|
date | Mon, 12 Feb 2018 13:05:46 -0500 |
parents | a4c3db6825f4 |
children | d7cddde5703a |
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--- a/MSSimulator.xml Thu Jan 11 18:18:03 2018 -0500 +++ b/MSSimulator.xml Mon Feb 12 13:05:46 2018 -0500 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> -<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Utilities]--> -<tool id="MSSimulator" name="MSSimulator" version="2.2.0"> +<tool id="MSSimulator" name="MSSimulator" version="2.3.0"> <description>A highly configurable simulator for mass spectrometry experiments.</description> <macros> <token name="@EXECUTABLE@">MSSimulator</token> @@ -626,26 +626,31 @@ </sanitizer> </param> <param name="param_algorithm_MSSim_Digestion_enzyme" type="select" optional="False" value="Trypsin" label="Enzyme to use for digestion (select 'no cleavage' to skip digestion)" help="(-enzyme) "> - <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> + <option value="CNBr">CNBr</option> <option value="Trypsin/P">Trypsin/P</option> + <option value="Lys-C">Lys-C</option> <option value="Formic_acid">Formic_acid</option> + <option value="Arg-C/P">Arg-C/P</option> + <option value="Alpha-lytic protease">Alpha-lytic protease</option> + <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> + <option value="proline endopeptidase">proline endopeptidase</option> + <option value="Arg-C">Arg-C</option> + <option value="unspecific cleavage">unspecific cleavage</option> + <option value="Trypsin" selected="true">Trypsin</option> <option value="TrypChymo">TrypChymo</option> - <option value="V8-DE">V8-DE</option> - <option value="CNBr">CNBr</option> - <option value="Chymotrypsin">Chymotrypsin</option> - <option value="Asp-N">Asp-N</option> - <option value="Lys-C">Lys-C</option> + <option value="V8-E">V8-E</option> + <option value="2-iodobenzoate">2-iodobenzoate</option> + <option value="Chymotrypsin/P">Chymotrypsin/P</option> + <option value="no cleavage">no cleavage</option> + <option value="Asp-N_ambic">Asp-N_ambic</option> <option value="PepsinA">PepsinA</option> + <option value="Chymotrypsin">Chymotrypsin</option> + <option value="V8-DE">V8-DE</option> + <option value="Asp-N/B">Asp-N/B</option> + <option value="Lys-N">Lys-N</option> <option value="Lys-C/P">Lys-C/P</option> - <option value="Asp-N_ambic">Asp-N_ambic</option> - <option value="Arg-C">Arg-C</option> - <option value="proline endopeptidase">proline endopeptidase</option> - <option value="Trypsin" selected="true">Trypsin</option> - <option value="2-iodobenzoate">2-iodobenzoate</option> - <option value="no cleavage">no cleavage</option> - <option value="unspecific cleavage">unspecific cleavage</option> - <option value="V8-E">V8-E</option> <option value="leukocyte elastase">leukocyte elastase</option> + <option value="Asp-N">Asp-N</option> </param> <param name="param_algorithm_MSSim_Digestion_model" display="radio" type="select" optional="False" value="naive" label="The cleavage model to use for digestion" help="(-model) 'Trained' is based on a log likelihood model (see DOI:10.1021/pr060507u)"> <option value="trained">trained</option>