Mercurial > repos > galaxyp > openms_multiplexresolver

comparison MultiplexResolver.xml @ 11:b3dcd2098472 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:07:55 +0000
parents 381448b2db6d
children 021fdb80f204
comparison
equal deleted inserted replaced
10:fb647b7cf2c1 11:b3dcd2098472
88 <param name="ICPL4" argument="-labels:ICPL4" type="float" optional="true" min="0.0" value="109.046571" label="ICPL:2H(4) | H(-1) 2H(4) C(6) N O | unimod #687" help=""/> 88 <param name="ICPL4" argument="-labels:ICPL4" type="float" optional="true" min="0.0" value="109.046571" label="ICPL:2H(4) | H(-1) 2H(4) C(6) N O | unimod #687" help=""/>
89 <param name="ICPL6" argument="-labels:ICPL6" type="float" optional="true" min="0.0" value="111.041593" label="ICPL:13C(6) | H(3) 13C(6) N O | unimod #364" help=""/> 89 <param name="ICPL6" argument="-labels:ICPL6" type="float" optional="true" min="0.0" value="111.041593" label="ICPL:13C(6) | H(3) 13C(6) N O | unimod #364" help=""/>
90 <param name="ICPL10" argument="-labels:ICPL10" type="float" optional="true" min="0.0" value="115.0667" label="ICPL:13C(6)2H(4) | H(-1) 2H(4) 13C(6) N O | unimod #866" help=""/> 90 <param name="ICPL10" argument="-labels:ICPL10" type="float" optional="true" min="0.0" value="115.0667" label="ICPL:13C(6)2H(4) | H(-1) 2H(4) 13C(6) N O | unimod #866" help=""/>
91 </section> 91 </section>
92 <expand macro="adv_opts_macro"> 92 <expand macro="adv_opts_macro">
93 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 93 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
94 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 94 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
95 <expand macro="list_string_san"/> 95 <expand macro="list_string_san"/>
96 </param> 96 </param>
97 </expand> 97 </expand>
98 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 98 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
99 <option value="out_conflicts_FLAG">out_conflicts (ICPL:13C(6)2H(4) | H(-1) 2H(4) 13C(6) N O | unimod #866)</option> 99 <option value="out_conflicts_FLAG">out_conflicts (Optional output containing peptide multiplets without ID annotation or with conflicting quant/ID information)</option>
100 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 100 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
101 </param> 101 </param>
102 </inputs> 102 </inputs>
103 <outputs> 103 <outputs>
104 <data name="out" label="${tool.name} on ${on_string}: out" format="consensusxml"/> 104 <data name="out" label="${tool.name} on ${on_string}: out" format="consensusxml"/>
114 <expand macro="manutest_MultiplexResolver"/> 114 <expand macro="manutest_MultiplexResolver"/>
115 </tests> 115 </tests>
116 <help><![CDATA[Completes peptide multiplets and resolves conflicts within them. 116 <help><![CDATA[Completes peptide multiplets and resolves conflicts within them.
117 117
118 118
119 For more information, visit http://www.openms.de/documentation/UTILS_MultiplexResolver.html]]></help> 119 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_MultiplexResolver.html]]></help>
120 <expand macro="references"/> 120 <expand macro="references"/>
121 </tool> 121 </tool>